RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CPEB1Q9BZB8 566 aaKnown RBP21.01■□□□□ 0.95
SDC1-205ENST00000447124 MYO1AQ9UBC5 1043 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 DKK3Q9UBP4 350 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 UBA2Q9UBT2 640 aaPredicted RBP21.01■□□□□ 0.95
SDC1-205ENST00000447124 KLF15Q9UIH9 416 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 FAM208BQ5VWN6 2430 aa21■□□□□ 0.95
SDC1-205ENST00000447124 SPTY2D1-AS1A0A0U1RR47 76 aa21■□□□□ 0.95
SDC1-205ENST00000447124 LRCH4O75427 683 aa21■□□□□ 0.95
SDC1-205ENST00000447124 RNF8O76064 485 aa21■□□□□ 0.95
SDC1-205ENST00000447124 PIGNO95427 931 aa21■□□□□ 0.95
SDC1-205ENST00000447124 DESP17661 470 aa21■□□□□ 0.95
SDC1-205ENST00000447124 PFN3P60673 137 aa21■□□□□ 0.95
SDC1-205ENST00000447124 KLHL40Q2TBA0 621 aa21■□□□□ 0.95
SDC1-205ENST00000447124 RFX8Q6ZV50 586 aa21■□□□□ 0.95
SDC1-205ENST00000447124 ZSCAN30Q86W11 494 aa21■□□□□ 0.95
SDC1-205ENST00000447124 TP53INP2Q8IXH6 220 aa21■□□□□ 0.95
SDC1-205ENST00000447124 OR4C6Q8NH72 309 aa21■□□□□ 0.95
SDC1-205ENST00000447124 EIF3CLB5ME19 914 aaKnown RBP20.99■□□□□ 0.95
SDC1-205ENST00000447124 FPGTO14772 594 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 FFAR2O15552 330 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 CDK4P11802 303 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 MYF5P13349 255 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 JUPP14923 745 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 TCF4P15884 667 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 ACP1P24666 158 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 IL1R2P27930 398 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 RGRP47804 291 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 ARHGAP36Q6ZRI8 547 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 NPWQ8N729 165 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 PDCD7Q8N8D1 485 aaKnown RBP20.99■□□□□ 0.95
SDC1-205ENST00000447124 EIF3CQ99613 913 aaKnown RBP20.99■□□□□ 0.95
SDC1-205ENST00000447124 MBNL1Q9NR56 388 aaKnown RBP20.99■□□□□ 0.95
SDC1-205ENST00000447124 DNAJC28Q9NX36 388 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 CWC15Q9P013 229 aaKnown RBP20.99■□□□□ 0.95
SDC1-205ENST00000447124 DKK4Q9UBT3 224 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 LAMA5O15230 3695 aa20.99■□□□□ 0.95
SDC1-205ENST00000447124 PRPSAP2O60256 369 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 CSF2P04141 144 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 RABIFP47224 123 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 UBASH3AP57075 661 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 EIF2B5Q13144 721 aaKnown RBP20.98■□□□□ 0.95
SDC1-205ENST00000447124 TARDBPQ13148 414 aaKnown RBP eCLIP20.98■□□□□ 0.95
SDC1-205ENST00000447124 ILKQ13418 452 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 PDE1CQ14123 709 aaPredicted RBP20.98■□□□□ 0.95
SDC1-205ENST00000447124 TMEM52BQ4KMG9 183 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 PPP6R3Q5H9R7 873 aaPredicted RBP20.98■□□□□ 0.95
SDC1-205ENST00000447124 HES3Q5TGS1 186 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 ZSWIM9Q86XI8 627 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 PSTKQ8IV42 348 aaKnown RBP20.98■□□□□ 0.95
SDC1-205ENST00000447124 CPLX3Q8WVH0 158 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 NSMCE3Q96MG7 304 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 SUV39H2Q9H5I1 410 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 DONSONQ9NYP3 566 aa20.98■□□□□ 0.95
SDC1-205ENST00000447124 PNMA8BQ9ULN7 279 aaPredicted RBP20.98■□□□□ 0.95
SDC1-205ENST00000447124 LY6G6EA0A0G2JKS1 128 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 A0A1W2PQJ5 194 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 ARHGAP42A6NI28 874 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 SCAMP1O15126 338 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 DAPK3O43293 454 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 NEBLO76041 1014 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 IGFALSP35858 605 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 HCAR3P49019 387 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 DPYSQ14117 519 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 VPS36Q86VN1 386 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 CAMK1DQ8IU85 385 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 TP53I13Q8NBR0 393 aaPredicted RBP20.97■□□□□ 0.95
SDC1-205ENST00000447124 TSEN2Q8NCE0 465 aaKnown RBP20.97■□□□□ 0.95
SDC1-205ENST00000447124 DENND6BQ8NEG7 585 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 HCAR2Q8TDS4 363 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 ARHGEF26Q96DR7 871 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 WRAP53Q9BUR4 548 aaKnown RBP20.97■□□□□ 0.95
SDC1-205ENST00000447124 IPO11Q9UI26 975 aaKnown RBP20.97■□□□□ 0.95
SDC1-205ENST00000447124 RAXQ9Y2V3 346 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 SCINQ9Y6U3 715 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 U3KQA8 63 aa20.97■□□□□ 0.95
SDC1-205ENST00000447124 TSPAN11A1L157 253 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 K7ESM1 405 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 TM7SF2O76062 418 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 MYBL1P10243 752 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 NME1P15531 152 aaKnown RBP20.96■□□□□ 0.95
SDC1-205ENST00000447124 PCK1P35558 622 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 HNRNPKP61978 463 aaKnown RBP eCLIP20.96■□□□□ 0.95
SDC1-205ENST00000447124 INSM1Q01101 510 aaPredicted RBP20.96■□□□□ 0.95
SDC1-205ENST00000447124 SEMG2Q02383 582 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 UGP2Q16851 508 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 TXNRD3NBQ6F5E7 133 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 SRLQ86TD4 932 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 CXorf40AQ8TE69 158 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 RFFLQ8WZ73 363 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 SYN2Q92777 582 aaPredicted RBP20.96■□□□□ 0.95
SDC1-205ENST00000447124 TRIM11Q96F44 468 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 APOLD1Q96LR9 279 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.96■□□□□ 0.95
SDC1-205ENST00000447124 TCEAL2Q9H3H9 227 aaPredicted RBP20.96■□□□□ 0.95
SDC1-205ENST00000447124 MRPL47Q9HD33 250 aaKnown RBP20.96■□□□□ 0.95
SDC1-205ENST00000447124 ETNK2Q9NVF9 386 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 CAPN11Q9UMQ6 739 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 GPSM3Q9Y4H4 160 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 ASXL3Q9C0F0 2248 aa20.96■□□□□ 0.95
SDC1-205ENST00000447124 MUSKO15146 869 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms