RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 OXR1Q8N573 874 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 TMEM145Q8NBT3 493 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 HCAR2Q8TDS4 363 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 VOPP1Q96AW1 172 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 KLHDC7BQ96G42 594 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 ZNF641Q96N77 438 aaPredicted RBP15.37■□□□□ 0.05
LIMS3-201ENST00000437679 CAMK1GQ96NX5 476 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 TUBGCP5Q96RT8 1024 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 ZNF670Q9BS34 389 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 SUV39H2Q9H5I1 410 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 ATP13A3Q9H7F0 1226 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 FZD3Q9NPG1 666 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 LUC7LQ9NQ29 371 aaKnown RBP15.37■□□□□ 0.05
LIMS3-201ENST00000437679 KLHL11Q9NVR0 708 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 CA5BQ9Y2D0 317 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 SHROOM3Q8TF72 1996 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 A0A1B0GTQ1 180 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 YKT6O15498 198 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 PCDHGA12O60330 932 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 PAK4O96013 591 aaPredicted RBP15.36■□□□□ 0.05
LIMS3-201ENST00000437679 TIMP2P16035 220 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 SERPINA4P29622 427 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 CYLC1P35663 651 aaPredicted RBP15.36■□□□□ 0.05
LIMS3-201ENST00000437679 HSPA9P38646 679 aaKnown RBP15.36■□□□□ 0.05
LIMS3-201ENST00000437679 RGRP47804 291 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 ARRB1P49407 418 aaPredicted RBP15.36■□□□□ 0.05
LIMS3-201ENST00000437679 SUOXP51687 545 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 SIM1P81133 766 aaPredicted RBP15.36■□□□□ 0.05
LIMS3-201ENST00000437679 IL9RQ01113 521 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 SPA17Q15506 151 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 INAVAQ3KP66 663 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 ANKRD20A8PQ5CZ79 823 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 PRAMEF14Q5SWL7 426 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 LRRC49Q8IUZ0 686 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 PAF1Q8N7H5 531 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 FAM174AQ8TBP5 190 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 CXorf40AQ8TE69 158 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 RHBDD1Q8TEB9 315 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 PSKH2Q96QS6 385 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 PANX2Q96RD6 677 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 ERVMER34-1Q9H9K5 563 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 ITM2BQ9Y287 266 aa15.36■□□□□ 0.05
LIMS3-201ENST00000437679 SPAARA0A1B0GVQ0 90 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 IGLON5A6NGN9 336 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 AREL1O15033 823 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 MAFKO60675 156 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 THEGLP0DJG4 465 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 SLC1A1P43005 524 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 NOP2P46087 812 aaKnown RBP15.35■□□□□ 0.05
LIMS3-201ENST00000437679 SCNN1BP51168 640 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 AP1S1P61966 158 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 BCL2L1Q07817 233 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 SLC10A7Q0GE19 358 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 ELP6Q0PNE2 266 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 PAFAH1B3Q15102 231 aaKnown RBP15.35■□□□□ 0.05
LIMS3-201ENST00000437679 TCEAL1Q15170 157 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 TRIP6Q15654 476 aaKnown RBP15.35■□□□□ 0.05
LIMS3-201ENST00000437679 ODF2Q5BJF6 829 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 LRRC73Q5JTD7 316 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 BRAT1Q6PJG6 821 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 DBX2Q6ZNG2 339 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 CAMK1DQ8IU85 385 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 PCDH19Q8TAB3 1148 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 ASB12Q8WXK4 309 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 GGT7Q9UJ14 662 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 PCOLCE2Q9UKZ9 415 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 HS3ST3A1Q9Y663 406 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 ANKRD36A6QL64 1941 aa15.35■□□□□ 0.05
LIMS3-201ENST00000437679 TSPAN11A1L157 253 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 LRRD1A4D1F6 860 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 A6NNZ2 444 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 SPINT1O43278 529 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 MFSD11O43934 449 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 BUB1BO60566 1050 aaPredicted RBP15.34■□□□□ 0.05
LIMS3-201ENST00000437679 IPO7O95373 1038 aaKnown RBP15.34■□□□□ 0.05
LIMS3-201ENST00000437679 LCA5LO95447 670 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 ITGAVP06756 1048 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 KDELR1P24390 212 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 PMLP29590 882 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 GRK6P43250 576 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 RXRGP48443 463 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 CLDN2P57739 230 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 FGL2Q14314 439 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 UGP2Q16851 508 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 MARC1Q5VT66 337 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 NCBP2-AS2Q69YL0 99 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 ERAP2Q6P179 960 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 ABI3BPQ7Z7G0 1075 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 SPATS2Q86XZ4 545 aaKnown RBP15.34■□□□□ 0.05
LIMS3-201ENST00000437679 TMTC1Q8IUR5 882 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 RAPGEF5Q92565 580 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 FAF2Q96CS3 445 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 LENG8Q96PV6 779 aaPredicted RBP15.34■□□□□ 0.05
LIMS3-201ENST00000437679 CDC6Q99741 560 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 C1QTNF7Q9BXJ2 289 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 C1QTNF2Q9BXJ5 285 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 PCDHA13Q9Y5I0 950 aa15.34■□□□□ 0.05
LIMS3-201ENST00000437679 TPRP12270 2363 aaKnown RBP15.34■□□□□ 0.05
LIMS3-201ENST00000437679 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 FPGTO14772 594 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms