RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 AZIN2Q96A70 460 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 MRGPRX3Q96LB0 322 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 C1orf74Q96LT6 269 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 PRICKLE1Q96MT3 831 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 HERPUD2Q9BSE4 406 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 AP1M1Q9BXS5 423 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 FRMD8P1Q9BZ68 369 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 FBRSQ9HAH7 460 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 SGK2Q9HBY8 427 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 SCUBE2Q9NQ36 999 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 HOMER3Q9NSC5 361 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 DONSONQ9NYP3 566 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 TCRBV7S2A1N4TA0A589 114 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 RIOK3O14730 519 aaKnown RBP12.36□□□□□ -0.43
PTPRF-208ENST00000437607 MFSD11O43934 449 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 SIN3BO75182 1162 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 WNT1P04628 370 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 HCAR3P49019 387 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 SHBQ15464 509 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 MPP7Q5T2T1 576 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 ZNF776Q68DI1 518 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-208ENST00000437607 KIAA0895LQ68EN5 471 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 NCBP2-AS2Q69YL0 99 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 CCDC70Q6NSX1 233 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 GALNT15Q8N3T1 639 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 PQLC3Q8N755 202 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 HJURPQ8NCD3 748 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-208ENST00000437607 SPATA4Q8NEY3 305 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 P3H4Q92791 437 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 TTC17Q96AE7 1141 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 CRELD1Q96HD1 420 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 CCDC114Q96M63 670 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 SLC6A18Q96N87 628 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 RUNDC3BQ96NL0 473 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 MAGEB5Q9BZ81 275 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 ZYG11BQ9C0D3 744 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 PABPC3Q9H361 631 aaKnown RBP12.36□□□□□ -0.43
PTPRF-208ENST00000437607 PPARGC1AQ9UBK2 798 aaKnown RBP12.36□□□□□ -0.43
PTPRF-208ENST00000437607 SUN2Q9UH99 717 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 NEU3Q9UQ49 428 aa12.36□□□□□ -0.43
PTPRF-208ENST00000437607 TENM4Q6N022 2769 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 A0A1B0GTQ1 180 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 CBX4O00257 560 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 WNT9AO14904 365 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 MID1O15344 667 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 ATP5BP06576 529 aaKnown RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 RHOQP17081 205 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 ERCC2P18074 760 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 POLR2EP19388 210 aaKnown RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 AMPD1P23109 780 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 CHRNA3P32297 505 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 CSKP41240 450 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 CTSOP43234 321 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 FNTAP49354 379 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 CLDN6P56747 220 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 OTUD4Q01804 1114 aaKnown RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 NOMO1Q15155 1222 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 TTC31Q49AM3 519 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 FSCBQ5H9T9 825 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 PRAMEF14Q5SWL7 426 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 TEX35Q5T0J7 233 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 C8orf74Q6P047 294 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 FBXL22Q6P050 247 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 DHRS13Q6UX07 377 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 USP30Q70CQ3 517 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 BZW1Q7L1Q6 419 aaKnown RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 C14orf80Q86SX3 495 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 GATAD2AQ86YP4 633 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 KLHL7Q8IXQ5 586 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 PLD5Q8N7P1 536 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 RTL3Q8N8U3 475 aaKnown RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 FIBINQ8TAL6 211 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 ACTL9Q8TC94 416 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 ATG4AQ8WYN0 398 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 LRIG1Q96JA1 1093 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 PRMT1Q99873 361 aaKnown RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 FBXL12Q9NXK8 326 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 HEY1Q9Y5J3 304 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 COL27A1Q8IZC6 1860 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-208ENST00000437607 TRPM6Q9BX84 2022 aa12.35□□□□□ -0.43
PTPRF-208ENST00000437607 IGLV3-10A0A075B6K4 115 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 A0A1B0GVM2 712 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 A0A1W2PP55 124 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 A0A1W2PPC4 97 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 TCAF2A6NFQ2 919 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 FAM47DPA6NHR8 397 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 PPP1R12AO14974 1030 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 VILLO15195 856 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 PECAM1P16284 738 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 IL4RP24394 825 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 NR2C2P49116 596 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 MAPKAPK2P49137 400 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 RPS24P62847 133 aaKnown RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 RACK1P63244 317 aaKnown RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 ADCY2Q08462 1091 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 SIX1Q15475 284 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 CST6Q15828 149 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 CYP1B1Q16678 543 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 HNRNPA1L2Q32P51 320 aaKnown RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 CCDC157Q569K6 752 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms