RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 BBS5Q8N3I7 341 aa21.33■■□□□ 1.01
PTPRF-207ENST00000436724 SRPK1Q96SB4 655 aaKnown RBP21.33■■□□□ 1.01
PTPRF-207ENST00000436724 FGFR1OP2Q9NVK5 253 aa21.33■■□□□ 1.01
PTPRF-207ENST00000436724 MYOFQ9NZM1 2061 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 TPP1O14773 563 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 ZMPSTE24O75844 475 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 SERPINF2P08697 491 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 SEPT7Q16181 437 aaKnown RBP21.33■■□□□ 1
PTPRF-207ENST00000436724 ICE2Q659A1 982 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 ZNF449Q6P9G9 518 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 APCDD1Q8J025 514 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 NDUFAF2Q8N183 169 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 ALG14Q96F25 216 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 IFT43Q96FT9 208 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 SLC40A1Q9NP59 571 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 TREX1Q9NSU2 369 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 ARHGAP26Q9UNA1 814 aa21.33■■□□□ 1
PTPRF-207ENST00000436724 VGLL3A8MV65 326 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 TM9SF1O15321 606 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 TAC1P20366 129 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 CNTFP26441 200 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 GMPRP36959 345 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 MAGEA10P43363 369 aaPredicted RBP21.32■■□□□ 1
PTPRF-207ENST00000436724 ARCN1P48444 511 aaKnown RBP21.32■■□□□ 1
PTPRF-207ENST00000436724 CDK18Q07002 472 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 RBBP8Q99708 897 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 PRKAG3Q9UGI9 489 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 VPS51Q9UID3 782 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 XIRP2A4UGR9 3374 aa21.32■■□□□ 1
PTPRF-207ENST00000436724 HELZP42694 1942 aaKnown RBP21.32■■□□□ 1
PTPRF-207ENST00000436724 TMCC1O94876 653 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 PRAMEF12O95522 483 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 MT-CO1P00395 513 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 PIRTP0C851 137 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 CR2P20023 1033 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 CCNFP41002 786 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 PDE1BQ01064 536 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 PDPK2PQ6A1A2 396 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 ANKS4BQ8N8V4 417 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 USP13Q92995 863 aaPredicted RBP21.31■■□□□ 1
PTPRF-207ENST00000436724 ZSWIM3Q96MP5 696 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 PRRC2BQ5JSZ5 2229 aaKnown RBP21.31■■□□□ 1
PTPRF-207ENST00000436724 CCDC195A0A1B0GUA6 201 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 ETV4P43268 484 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 RFTN1Q14699 578 aaPredicted RBP21.31■■□□□ 1
PTPRF-207ENST00000436724 CBX2Q14781 532 aaPredicted RBP21.31■■□□□ 1
PTPRF-207ENST00000436724 GRTP1Q5TC63 336 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 FSTL4Q6MZW2 842 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 ZNF783Q6ZMS7 281 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 TIFABQ6ZNK6 161 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 DENND6AQ8IWF6 608 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 CPXM2Q8N436 756 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 ACVR1CQ8NER5 493 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 PTCD2Q8WV60 388 aaKnown RBP21.31■■□□□ 1
PTPRF-207ENST00000436724 ING5Q8WYH8 240 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 CHKBQ9Y259 395 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 ZNF510Q9Y2H8 683 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 FCF1Q9Y324 198 aaKnown RBP21.31■■□□□ 1
PTPRF-207ENST00000436724 KCTD3Q9Y597 815 aa21.31■■□□□ 1
PTPRF-207ENST00000436724 E2F8A0AVK6 867 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 HEATR9A2RTY3 570 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 K7ERQ8 282 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 CCL22O00626 93 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 INSIG1O15503 277 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 DNAJC3Q13217 504 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 CTBP1Q13363 440 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 FAM47EQ6ZV65 393 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 CMC1Q7Z7K0 106 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 DCLK2Q8N568 766 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 FEM1CQ96JP0 617 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 TASP1Q9H6P5 420 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 MRM3Q9HC36 420 aaKnown RBP21.3■■□□□ 1
PTPRF-207ENST00000436724 SNX3O60493 162 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 HOXA9P31269 272 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 PDK4Q16654 411 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 MPPE1Q53F39 396 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 PPM1JQ5JR12 505 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 C12orf76Q8N812 135 aaPredicted RBP21.3■■□□□ 1
PTPRF-207ENST00000436724 PNPLA1Q8N8W4 532 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 BLOC1S5Q8TDH9 187 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 ZNF707Q96C28 371 aaPredicted RBP21.3■■□□□ 1
PTPRF-207ENST00000436724 TRIB3Q96RU7 358 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 IQCGQ9H095 443 aaKnown RBP21.3■■□□□ 1
PTPRF-207ENST00000436724 SCUBE2Q9NQ36 999 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 KLC4Q9NSK0 619 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 TDP1Q9NUW8 608 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 MTO1Q9Y2Z2 717 aaKnown RBP21.3■■□□□ 1
PTPRF-207ENST00000436724 PCDHGC4Q9Y5F7 938 aa21.3■■□□□ 1
PTPRF-207ENST00000436724 BUD23O43709 281 aaKnown RBP21.29■■□□□ 1
PTPRF-207ENST00000436724 XYLBO75191 536 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 GABRB3P28472 473 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 CD70P32970 193 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 LIMK2P53671 638 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 ERVK-21P61565 698 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 PDE1CQ14123 709 aaPredicted RBP21.29■■□□□ 1
PTPRF-207ENST00000436724 OR13J1Q8NGT2 312 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 SMIM14Q96QK8 99 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 MCMBPQ9BTE3 642 aa21.29■■□□□ 1
PTPRF-207ENST00000436724 NSRP1Q9H0G5 558 aaKnown RBP21.29■■□□□ 1
PTPRF-207ENST00000436724 CAB39LQ9H9S4 337 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms