RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SGO1Q5FBB7 561 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 ZBTB49Q6ZSB9 765 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 KBTBD6Q86V97 674 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 APOBEC3FQ8IUX4 373 aaKnown RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 CFAP52Q8N1V2 620 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 FBXL8Q96CD0 374 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 SENP8Q96LD8 212 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 C3orf30Q96M34 536 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 OLFM1Q99784 485 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 GCOM2Q9BZD3 368 aaPredicted RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 OSBPL2Q9H1P3 480 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 PCDH12Q9NPG4 1184 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 PRDM8Q9NQV8 689 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 MIOSQ9NXC5 875 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 CDC14AQ9UNH5 594 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 DOCK3Q8IZD9 2030 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 INPP4BO15327 924 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 BNIP3LO60238 219 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 KPNA6O60684 536 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 SH3BGRLO75368 114 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 FAM58BPP0C7Q3 252 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 NPR3P17342 541 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 LRPAP1P30533 357 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 LSM3P62310 102 aaKnown RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 GHRHRQ02643 423 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 GRTP1Q5TC63 336 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 SLC27A1Q6PCB7 646 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 PAQR9Q6ZVX9 377 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 LPCAT2Q7L5N7 544 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 TAC4Q86UU9 113 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 LSMEM2Q8N112 164 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 ATPAF2Q8N5M1 289 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 TRPC4APQ8TEL6 797 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 NR1H4Q96RI1 486 aaPredicted RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 ACOX2Q99424 681 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 C16orf70Q9BSU1 422 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 EFCAB1Q9HAE3 211 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 TNS1Q9HBL0 1735 aaKnown RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 BPIFA1Q9NP55 256 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 DMAP1Q9NPF5 467 aaPredicted RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 ABI2Q9NYB9 513 aaPredicted RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 MORF4L1Q9UBU8 362 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 EBF1Q9UH73 591 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 PSMD13Q9UNM6 376 aa8.73□□□□□ -1.01
USP40-203ENST00000427112 PRG3Q9Y2Y8 225 aaPredicted RBP8.73□□□□□ -1.01
USP40-203ENST00000427112 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 MRASO14807 208 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 UBDO15205 165 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 CCNT2O60583 730 aaKnown RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 KCNH1O95259 989 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 PPARGP37231 505 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 CD86P42081 329 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 CCNA1P78396 465 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 PPIDQ08752 370 aaKnown RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 INCA1Q0VD86 236 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 RABL3Q5HYI8 236 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 PLPPR4Q7Z2D5 763 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 C14orf80Q86SX3 495 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ZC3HC1Q86WB0 502 aaKnown RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 LSRQ86X29 649 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 GABPB2Q8TAK5 448 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 SGCDQ92629 289 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 TRAPPC9Q96Q05 1148 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 SERPINI1Q99574 410 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 SMOQ99835 787 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 OXSMQ9NWU1 459 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 SLAMF8Q9P0V8 285 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 FETUBQ9UGM5 382 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 AP4S1Q9Y587 144 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 J3KR12 359 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 MATN2O00339 956 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ENPP3O14638 875 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 DDHD2O94830 711 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ZFXP17010 805 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 SLC5A2P31639 672 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 CCR1P32246 355 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 PBX3P40426 434 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 MAGEA3P43357 314 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 NDST2P52849 883 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 DSC2Q02487 901 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ADGRE1Q14246 886 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 LAPTM4AQ15012 233 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ZNF423Q2M1K9 1284 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 GPR107Q5VW38 600 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ANKRD34AQ69YU3 496 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 PGM2L1Q6PCE3 622 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ZNF598Q86UK7 904 aaKnown RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 CBR4Q8N4T8 237 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 TUBGCP3Q96CW5 907 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 VPS50Q96JG6 964 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 COLEC11Q9BWP8 271 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 FRMD8P1Q9BZ68 369 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 LMCD1Q9NZU5 365 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 MARCH4Q9P2E8 410 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 VPS4AQ9UN37 437 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 IPPQ9Y573 584 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 SPEGQ15772 3267 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 SOCS2O14508 198 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 AXIN1O15169 862 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms