RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 NMRK1Q9NWW6 199 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 TAGLN3Q9UI15 199 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 DSEQ9UL01 958 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 ACOT9Q9Y305 439 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 SNAP91O60641 907 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 VNN2O95498 520 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 STMN1P16949 149 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 CDKN2DP55273 166 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 LSM12Q3MHD2 195 aaKnown RBP12.04□□□□□ -0.48
PTPRN-204ENST00000423636 PCID2Q5JVF3 399 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 SIRPB2Q5JXA9 342 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 WLSQ5T9L3 541 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 LRRC8DQ7L1W4 858 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 PCDH20Q8N6Y1 951 aaKnown RBP12.04□□□□□ -0.48
PTPRN-204ENST00000423636 PCSK9Q8NBP7 692 aaKnown RBP12.04□□□□□ -0.48
PTPRN-204ENST00000423636 OR9I1Q8NGQ6 314 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 SCG3Q8WXD2 468 aaKnown RBP12.04□□□□□ -0.48
PTPRN-204ENST00000423636 INPP5DQ92835 1189 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 TSNARE1Q96NA8 513 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 TM6SF2Q9BZW4 377 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 SMG9Q9H0W8 520 aaKnown RBP12.04□□□□□ -0.48
PTPRN-204ENST00000423636 GPAMQ9HCL2 828 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 CREBZFQ9NS37 354 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 RALGAPA2Q2PPJ7 1873 aa12.04□□□□□ -0.48
PTPRN-204ENST00000423636 MTMR11A4FU01 709 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 RAMP2O60895 175 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ZCCHC18P0CG32 403 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 PEX19P40855 299 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 PLIN5Q00G26 463 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 PLD1Q13393 1074 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 TAF12Q16514 161 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 MON1AQ86VX9 555 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 RPL10LQ96L21 214 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 KCNA7Q96RP8 456 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 SLC22A12Q96S37 553 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 EIF2B3Q9NR50 452 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 TRHDEQ9UKU6 1024 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ZFP37Q9Y6Q3 630 aaPredicted RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 PSMG1O95456 288 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ATF6P18850 670 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 TFEBP19484 476 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 CES1P23141 567 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 SEMA3AQ14563 771 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ANO4Q32M45 955 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 FUT10Q6P4F1 479 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 TRAF7Q6Q0C0 670 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 TMEM207Q6UWW9 146 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 RSRC1Q96IZ7 334 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 RGS18Q9NS28 235 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 TCAF1Q9Y4C2 921 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 MYLKQ15746 1914 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 MYOFQ9NZM1 2061 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 NYNRINQ9P2P1 1898 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ERI2A8K979 691 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 MAP3K13O43283 966 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ATP5HO75947 161 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 CCNCP24863 283 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ARCN1P48444 511 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 NSUN2Q08J23 767 aaKnown RBP eCLIP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 TSTD2Q5T7W7 516 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 LRRC8EQ6NSJ5 796 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 C4orf22Q6V702 233 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 PGAP3Q96FM1 320 aaPredicted RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 NSUN5Q96P11 429 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 SERPINB11Q96P15 392 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 ZYG11BQ9C0D3 744 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 RNF38Q9H0F5 515 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 GALPQ9UBC7 116 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 FAM8A1Q9UBU6 413 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 SRRDQ9UH36 339 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 PCDHB8Q9UN66 801 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 SSX2IPQ9Y2D8 614 aa12.03□□□□□ -0.48
PTPRN-204ENST00000423636 AAR2Q9Y312 384 aaKnown RBP12.03□□□□□ -0.48
PTPRN-204ENST00000423636 A0A1B0GTL3 188 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 K7ERQ8 282 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 ZNF195O14628 629 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 NCAM2O15394 837 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 SUPT7LO94864 414 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 TGDSO95455 350 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 IGLV3-25P01717 112 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 CYP11A1P05108 521 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 CTPS1P17812 591 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 RAB27AP51159 221 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 RIPK1Q13546 671 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 ZNF235Q14590 738 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 ARTNQ5T4W7 220 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 GK5Q6ZS86 529 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 IFT43Q96FT9 208 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 UNC93B1Q9H1C4 597 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 EBF2Q9HAK2 575 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 TCF7L2Q9NQB0 619 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 MARCH5Q9NX47 278 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 TRIM17Q9Y577 477 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 TSC2P49815 1807 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 ZNF487B1APH4 448 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 KPNA6O60684 536 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 IGHA2P01877 340 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 PAX7P23759 505 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 FMO4P31512 558 aa12.02□□□□□ -0.49
PTPRN-204ENST00000423636 SKIV2L2P42285 1042 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms