RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	SLC25A51	Q9H1U9	297 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	KCNH6	Q9H252	994 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	SUV39H2	Q9H5I1	410 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	USP29	Q9HBJ7	922 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	GLOD4	Q9HC38	313 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	ITM2C	Q9NQX7	267 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	SMARCAL1	Q9NZC9	954 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	DKK3	Q9UBP4	350 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	RSPH14	Q9UHP6	348 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	FZD4	Q9ULV1	537 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	DRG1	Q9Y295	367 aa	Known RBP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725	PCDHGA2	Q9Y5H1	932 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	TP53BP1	Q12888	1972 aa	Predicted RBP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725	TTC24	A2A3L6	582 aa	Predicted RBP	13.29	□□□□□ -0.28
SF1-206	ENST00000413725	C5orf60	A6NFR6	353 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	SLC7A4	O43246	635 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	PHF2	O75151	1096 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	GJB3	O75712	270 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	IGLV3-19	P01714	112 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	NFKB1	P19838	968 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	XPA	P23025	273 aa	Predicted RBP	13.29	□□□□□ -0.28
SF1-206	ENST00000413725	CNR2	P34972	360 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	DRD3	P35462	400 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	P2RY2	P41231	377 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	CD86	P42081	329 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	NEK3	P51956	506 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	CNTN1	Q12860	1018 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	CYP1B1	Q16678	543 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	ANKRD20A2	Q5SQ80	823 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	ANKRD20A1	Q5TYW2	823 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	ANKRD20A3	Q5VUR7	823 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	FBXL19	Q6PCT2	694 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	BRAT1	Q6PJG6	821 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	SLC36A4	Q6YBV0	504 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	ARHGEF18	Q6ZSZ5	1173 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	ERN2	Q76MJ5	926 aa	Known RBP	13.29	□□□□□ -0.28
SF1-206	ENST00000413725	GSTA5	Q7RTV2	222 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	C11orf74	Q86VG3	221 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	CAMK1D	Q8IU85	385 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	AADAT	Q8N5Z0	425 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	CCDC89	Q8N998	374 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	C12orf50	Q8NA57	414 aa	Predicted RBP	13.29	□□□□□ -0.28
SF1-206	ENST00000413725	KIF18A	Q8NI77	898 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	ARRDC2	Q8TBH0	407 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	GAB3	Q8WWW8	586 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	ARRDC3	Q96B67	414 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	RTP4	Q96DX8	246 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	IMP4	Q96G21	291 aa	Known RBP	13.29	□□□□□ -0.28
SF1-206	ENST00000413725	HDAC8	Q9BY41	377 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	GBA3	Q9H227	469 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	CYP8B1	Q9UNU6	501 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	HCN4	Q9Y3Q4	1203 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	PLXNA2	O75051	1894 aa		13.29	□□□□□ -0.28
SF1-206	ENST00000413725	C16orf96	A6NNT2	1141 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	NDUFS2	O75306	463 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	GCAT	O75600	419 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	RPP40	O75818	363 aa	Known RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	ANXA9	O76027	345 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	URI1	O94763	535 aa	Predicted RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	IFNB1	P01574	187 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	NFKBIA	P25963	317 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	CD6	P30203	668 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	CD68	P34810	354 aa	Predicted RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	TNNT3	P45378	269 aa	Predicted RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	FNTA	P49354	379 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	SUOX	P51687	545 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	METAP1	P53582	386 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	GDF10	P55107	478 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	POLR2L	P62875	67 aa	Known RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	NIPAL4	Q0D2K0	466 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	PRPSAP1	Q14558	356 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	SLC14A2	Q15849	920 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	P3H1	Q32P28	736 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	MAP7D1	Q3KQU3	841 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	ARMC12	Q5T9G4	340 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	PARS2	Q7L3T8	475 aa	Known RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	FAM124A	Q86V42	546 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	ZBTB44	Q8NCP5	570 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	ATL2	Q8NHH9	583 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	CCDC110	Q8TBZ0	833 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	GRK7	Q8WTQ7	553 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	PDCD6IP	Q8WUM4	868 aa	Known RBP	13.28	□□□□□ -0.28
SF1-206	ENST00000413725	RLN3	Q8WXF3	142 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	RAB7B	Q96AH8	199 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	LRRC45	Q96CN5	670 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	ECHDC3	Q96DC8	303 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	FCRL5	Q96RD9	977 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	RBM15	Q96T37	977 aa	Known RBP eCLIP	13.28	□□□□□ -0.28	8e-9	■□□□□ 8.5
SF1-206	ENST00000413725	BTBD1	Q9H0C5	482 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	NEUROG2	Q9H2A3	272 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	SGK2	Q9HBY8	427 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	CD93	Q9NPY3	652 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	SERGEF	Q9UGK8	458 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	PCDHGC4	Q9Y5F7	938 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	RAI2	Q9Y5P3	530 aa		13.28	□□□□□ -0.28
SF1-206	ENST00000413725	MYLK	Q15746	1914 aa		13.27	□□□□□ -0.28
SF1-206	ENST00000413725	IGHV1OR15-9	A0A0B4J2B8	117 aa		13.27	□□□□□ -0.29
SF1-206	ENST00000413725	TSPAN11	A1L157	253 aa		13.27	□□□□□ -0.29
SF1-206	ENST00000413725	GOLGA6C	A6NDK9	693 aa		13.27	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms