RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 MRPS31Q92665 395 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TMCO6Q96DC7 493 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TREM1Q9NP99 234 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 ARHGEF40Q8TER5 1519 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 LHCGRP22888 699 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 GADD45AP24522 165 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CDH17Q12864 832 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 FAM91A1Q658Y4 838 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 RAB12Q6IQ22 244 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 ZCCHC12Q6PEW1 402 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 GALNT7Q86SF2 657 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 RPL14P50914 215 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TSPAN5P62079 268 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 ERFEQ4G0M1 354 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 XKR3Q5GH77 459 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 THG1LQ9NWX6 298 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 EDARQ9UNE0 448 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 PHF24Q9UPV7 400 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF780BQ9Y6R6 833 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 URADA6NGE7 173 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 SLC30A4O14863 429 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 SLC28A2O43868 658 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 PSKH1P11801 424 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 PTPRNQ16849 979 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF563Q8TA94 476 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 MTF2Q9Y483 593 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 FAM196BA6NMK8 535 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ANXA2P2A6NMY6 339 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 H7C2Y5 167 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ANXA2P07355 339 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 CTSHP09668 335 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 S100PP25815 95 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 RFKQ969G6 155 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 COMMD4Q9H0A8 199 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 PRMT7Q9NVM4 692 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 H0YJX3 145 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 SUV39H1O43463 412 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 SEPHS1P49903 392 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 FAM126AQ9BYI3 521 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 HNF4AP41235 474 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 TXNL4AP83876 142 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM62Q0P6H9 643 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 OVOS1Q6IE37 1185 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ITIH5Q86UX2 942 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 OXER1Q8TDS5 423 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ARHGEF4Q9NR80 690 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 FARSAQ9Y285 508 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 WDR27A2RRH5 827 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 RIIAD1A6NNX1 92 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 PP2D1A8MPX8 630 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 INSCQ1MX18 579 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF470Q6ECI4 717 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 HAGHLQ6PII5 290 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 CYP4X1Q8N118 509 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ZSWIM2Q8NEG5 633 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 TP53INP1Q96A56 240 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 TRIM43Q96BQ3 446 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 OGTO15294 1046 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 CD40LGP29965 261 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 FOLH1Q04609 750 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 AMHR2Q16671 573 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 THAP5Q7Z6K1 395 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 PM20D2Q8IYS1 436 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 C11orf65Q8NCR3 313 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ACTRT1Q8TDG2 376 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 TOR3AQ9H497 397 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 BSDC1Q9NW68 430 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 MDFIC2A0A1B0GVS7 189 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 SLC5A9Q2M3M2 681 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM17Q86X19 198 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF280BQ86YH2 543 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 SLC34A3Q8N130 599 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 OR2L2Q8NH16 312 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 TBL1YQ9BQ87 522 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 SMURF1Q9HCE7 757 aa13.42□□□□□ -0.26
CCDC88A-204ENST00000413716 IPO13O94829 963 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 HSD17B2P37059 387 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 MARSP56192 900 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 LIPEQ05469 1076 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 POF1BQ8WVV4 589 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 IRX2Q9BZI1 471 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 HIF3AQ9Y2N7 669 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 TUBG1P23258 451 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 EPHB3P54753 998 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 PHC1P78364 1004 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 LSM12Q3MHD2 195 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 SPESP1Q6UW49 350 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ENY2Q9NPA8 101 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 POFUT2Q9Y2G5 429 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 MLYCDO95822 493 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ITGB3P05106 788 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ANXA5P08758 320 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 GNALP38405 381 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 PRKAG1P54619 331 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 MAPKAPK3Q16644 382 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 C2orf76Q3KRA6 126 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 VPS26BQ4G0F5 336 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 UNC5CLQ8IV45 518 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 NEDD4LQ96PU5 975 aa13.41□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF69Q9UC07 566 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms