RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TRIM43BA6NCK2 446 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 TCP11X1B4DZS4 312 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 QSOX1O00391 747 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 RIPK2O43353 540 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 NDST3O95803 873 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 DNTTP04053 509 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 LPOP22079 712 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-211ENST00000413186 IL1R2P27930 398 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 OGDHQ02218 1023 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 SLC25A11Q02978 314 aaKnown RBP8.61□□□□□ -1.03
SYNE1-211ENST00000413186 MBTPS1Q14703 1052 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 CA9Q16790 459 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 SETMARQ53H47 684 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-211ENST00000413186 NEPROQ6NW34 567 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 FAM180AQ6UWF9 173 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 PTAR1Q7Z6K3 402 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-211ENST00000413186 TRIM43Q96BQ3 446 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-211ENST00000413186 CPNE1Q99829 537 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 PRMT1Q99873 361 aaKnown RBP8.61□□□□□ -1.03
SYNE1-211ENST00000413186 GBA3Q9H227 469 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 SEMA4AQ9H3S1 761 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 CSNK1G1Q9HCP0 422 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 TMLHEQ9NVH6 421 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 GTSE1Q9NYZ3 720 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 GGA2Q9UJY4 613 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 ANGPTL2Q9UKU9 493 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 TBC1D30Q9Y2I9 924 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 R3HDM2Q9Y2K5 976 aaKnown RBP8.61□□□□□ -1.03
SYNE1-211ENST00000413186 ACOT9Q9Y305 439 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 PCDHB9Q9Y5E1 797 aa8.61□□□□□ -1.03
SYNE1-211ENST00000413186 LEFTY2O00292 366 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 COCHO43405 550 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 SPAG7O75391 227 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 NUDT17P0C025 328 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MYL2P10916 166 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ETS1P14921 441 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MAXP61244 160 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 RPS24P62847 133 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ELP6Q0PNE2 266 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 PTCD2Q8WV60 388 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ART4Q93070 314 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ARL8AQ96BM9 186 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 HMCESQ96FZ2 354 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MYO19Q96H55 970 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 OR56A5P0C7T3 313 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ADH5P11766 374 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 GDI1P31150 447 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 SERPINB4P48594 390 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 KDSRQ06136 332 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 LYPLAL1Q5VWZ2 237 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 KLHDC10Q6PID8 442 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 KIAA1324Q6UXG2 1013 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ACAD11Q709F0 780 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MYO1HQ8N1T3 1032 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 SPDYE1Q8NFV5 336 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 CEP19Q96LK0 163 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MAGEB18Q96M61 343 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 NR1H4Q96RI1 486 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 C17orf80Q9BSJ5 609 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 KCTD5Q9NXV2 234 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 NINJ2Q9NZG7 142 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MTO1Q9Y2Z2 717 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 PLXNB2O15031 1838 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ABHD2P08910 425 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 RBP1P09455 135 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ERVK-21P61565 698 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 PPIDQ08752 370 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 WASHC5Q12768 1159 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MRPL28Q13084 256 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 CYP1B1Q16678 543 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ZNF470Q6ECI4 717 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ZNF783Q6ZMS7 281 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 FAM47EQ6ZV65 393 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 ARID3BQ8IVW6 561 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 C4orf33Q8N1A6 199 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 AGGF1Q8N302 714 aaeCLIP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 EXOC2Q96KP1 924 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 TEKT5Q96M29 485 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 EBNA1BP2Q99848 306 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 CLSTN3Q9BQT9 956 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 SLC39A8Q9C0K1 460 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 GEMIN8Q9NWZ8 242 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 FIS1Q9Y3D6 152 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 BRCA1P38398 1863 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 SCAPQ12770 1279 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 PAFAH1B3Q15102 231 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 MS4A13Q5J8X5 152 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 NANOGNBQ7Z5D8 188 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 CMTM8Q8IZV2 173 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 N4BP2L2Q92802 583 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 EFHD1Q9BUP0 239 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 TMPRSS4Q9NRS4 437 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 TAS2R13Q9NYV9 303 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 NOP53Q9NZM5 478 aaKnown RBP8.6□□□□□ -1.03
SYNE1-211ENST00000413186 SNX10Q9Y5X0 201 aa8.6□□□□□ -1.03
SYNE1-211ENST00000413186 CCT8L1PA6NM43 557 aa8.59□□□□□ -1.03
SYNE1-211ENST00000413186 TM9SF1O15321 606 aa8.59□□□□□ -1.03
SYNE1-211ENST00000413186 TMCC1O94876 653 aa8.59□□□□□ -1.03
SYNE1-211ENST00000413186 EEF1DP29692 281 aaKnown RBP8.59□□□□□ -1.03
SYNE1-211ENST00000413186 CORO7P57737 925 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms