RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 ATXN7L2Q5T6C5 722 aaPredicted RBP6.72□□□□□ -1.33
VPS41-204ENST00000413141 PRPF38BQ5VTL8 546 aaKnown RBP6.72□□□□□ -1.33
VPS41-204ENST00000413141 ARMC3Q5W041 872 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 NCEH1Q6PIU2 408 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 C3orf62Q6ZUJ4 267 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 KDELC2Q7Z4H8 507 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 CROCCP2Q86T23 111 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 YAF2Q8IY57 180 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 KRT222Q8N1A0 295 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 SH2D3CQ8N5H7 860 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 SLC25A41Q8N5S1 370 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 PPHLN1Q8NEY8 458 aaKnown RBP6.72□□□□□ -1.33
VPS41-204ENST00000413141 OR2AP1Q8NGE2 309 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 GSDMBQ8TAX9 411 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 TTC17Q96AE7 1141 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 ZNF669Q96BR6 464 aaPredicted RBP6.72□□□□□ -1.33
VPS41-204ENST00000413141 IFT43Q96FT9 208 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 MS4A3Q96HJ5 214 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 PKNOX2Q96KN3 472 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 RPL10LQ96L21 214 aaKnown RBP6.72□□□□□ -1.33
VPS41-204ENST00000413141 TM6SF2Q9BZW4 377 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 CEP44Q9C0F1 390 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 PPCSQ9HAB8 311 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 TMBIM4Q9HC24 238 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 EURLQ9NYK6 297 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 SAMD15Q9P1V8 674 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 CTNNAL1Q9UBT7 734 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 FETUBQ9UGM5 382 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 RABGEF1Q9UJ41 708 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 SOX13Q9UN79 622 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 SLC27A6Q9Y2P4 619 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 NUMBLQ9Y6R0 609 aa6.72□□□□□ -1.33
VPS41-204ENST00000413141 XIRP2A4UGR9 3374 aa6.71□□□□□ -1.33
VPS41-204ENST00000413141 ZCWPW2A0A1B0GU75 182 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 FAM237BA0A1B0GVD1 139 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 ANHXE9PGG2 379 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 RASGRF2O14827 1237 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 ATP9BO43861 1147 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 CDH16O75309 829 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 USP1O94782 785 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 ALDH1A2O94788 518 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 NDST3O95803 873 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 EPOP01588 193 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 ASLP04424 464 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 POLBP06746 335 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 POLR2EP19388 210 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 KCNA5P22460 613 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 CA4P22748 312 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 SP100P23497 879 aaPredicted RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 GDI1P31150 447 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 OPRD1P41143 372 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 EIF2DP41214 584 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 SLCO1A2P46721 670 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 SLC6A11P48066 632 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 CSNK1DP48730 415 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 MESP2Q0VG99 397 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 MSLNQ13421 630 aaPredicted RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 SMAD4Q13485 552 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 RUNX3Q13761 415 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 FRG1Q14331 258 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 PTPRNQ16849 979 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 KBTBD12Q3ZCT8 623 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 PCID2Q5JVF3 399 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 DGKKQ5KSL6 1271 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 SPANXN3Q5MJ09 141 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 AGBL2Q5U5Z8 902 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 NAIF1Q69YI7 327 aaPredicted RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 GRAMD4Q6IC98 578 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 TRMT10BQ6PF06 316 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 SRLQ86TD4 932 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 TMEM135Q86UB9 458 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 TDRPQ86YL5 185 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 PHTF2Q8N3S3 785 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 RIBC1Q8N443 379 aaPredicted RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 PCDH20Q8N6Y1 951 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 TERB1Q8NA31 727 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS41-204ENST00000413141 OR6K2Q8NGY2 324 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 CYB5D2Q8WUJ1 264 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 PTCD2Q8WV60 388 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 SORCS1Q8WY21 1168 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 MYLIPQ8WY64 445 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 NXPE3Q969Y0 559 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 ISG20Q96AZ6 181 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 ARL8AQ96BM9 186 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 CHFRQ96EP1 664 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 PGM2Q96G03 612 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 MYO19Q96H55 970 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 MRGPRX3Q96LB0 322 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 ATP6V1G3Q96LB4 118 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 RANBP9Q96S59 729 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 CYTH2Q99418 400 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 PAFAH2Q99487 392 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 CCDC77Q9BR77 488 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 DHRS4Q9BTZ2 278 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 RPP25Q9BUL9 199 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 TRMT61BQ9BVS5 477 aaKnown RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 KIFC1Q9BW19 673 aa6.71□□□□□ -1.34
VPS41-204ENST00000413141 ROPN1BQ9BZX4 212 aaPredicted RBP6.71□□□□□ -1.34
VPS41-204ENST00000413141 CIPCQ9C0C6 399 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms