RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ZDHHC18Q9NUE0 388 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 SAMD15Q9P1V8 674 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 LHX3Q9UBR4 397 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 FBXL21Q9UKT6 434 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 ZNF318Q5VUA4 2279 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 MYOFQ9NZM1 2061 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 EDDM13A0A1B0GTR0 161 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 A0A1W2PQ67 120 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 PRRT4C9JH25 899 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 SMAD6O43541 496 aaKnown RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 SUN1O94901 812 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 POP4O95707 220 aaKnown RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 CPP00450 1065 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 HLA-DPA1P20036 260 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 WNT3AP56704 352 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 SKOR1P84550 965 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 CDK18Q07002 472 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 DHX9Q08211 1270 aaKnown RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 NIPAL4Q0D2K0 466 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 PDIA2Q13087 525 aaKnown RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 SPARCL1Q14515 664 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 FAM182AQ5T1J6 154 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 ATXN7L2Q5T6C5 722 aaPredicted RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 TMEM215Q68D42 235 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 CASC4Q6P4E1 433 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 LRRC8BQ6P9F7 803 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 KDELC2Q7Z4H8 507 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 CHPFQ8IZ52 775 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 ARRDC2Q8TBH0 407 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 HNRNPLLQ8WVV9 542 aaKnown RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 SORCS1Q8WY21 1168 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 RMDN1Q96DB5 314 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 CHFRQ96EP1 664 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 OXNAD1Q96HP4 312 aaPredicted RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 FEM1CQ96JP0 617 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 TUBGCP5Q96RT8 1024 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 MLPHQ9BV36 600 aaPredicted RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 NEUROG2Q9H2A3 272 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 NOD2Q9HC29 1040 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 SAYSD1Q9NPB0 183 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 EVLQ9UI08 416 aaPredicted RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 SLCO3A1Q9UIG8 710 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 SORCS3Q9UPU3 1222 aa14.36□□□□□ -0.11
SKA1-202ENST00000398452 MRPS17Q9Y2R5 130 aaKnown RBP14.36□□□□□ -0.11
SKA1-202ENST00000398452 TCRBV7S3A2A0A539 114 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 MUSKO15146 869 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 TMEM63AO94886 807 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 CD160O95971 181 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 EPOP01588 193 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 CR2P20023 1033 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 NPY2RP49146 381 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 SESN2P58004 480 aaPredicted RBP14.35□□□□□ -0.11
SKA1-202ENST00000398452 SIGLEC14Q08ET2 396 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 LAMB3Q13751 1172 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 ZNF234Q14588 700 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 PON2Q15165 354 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 MYLK3Q32MK0 819 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 FBXO43Q4G163 708 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 SLC44A4Q53GD3 710 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 ARMC12Q5T9G4 340 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 NCEH1Q6PIU2 408 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 Q6ZVU0 165 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 DSG4Q86SJ6 1040 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 PRPF39Q86UA1 669 aaKnown RBP14.35□□□□□ -0.11
SKA1-202ENST00000398452 PALM2Q8IXS6 379 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 ZBED8Q8IZ13 594 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 SLC25A41Q8N5S1 370 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 ZNF513Q8N8E2 541 aaPredicted RBP14.35□□□□□ -0.11
SKA1-202ENST00000398452 OR52K1Q8NGK4 314 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 PYROXD1Q8WU10 500 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 OR8D1Q8WZ84 308 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 FAM3CQ92520 227 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 CAVIN3Q969G5 261 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 LRRC39Q96DD0 335 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 SHDQ96IW2 340 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 LRIG1Q96JA1 1093 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 TTC25Q96NG3 672 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 SERPINB12Q96P63 405 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 APOL2Q9BQE5 337 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 HEPHQ9BQS7 1158 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 ZDHHC6Q9H6R6 413 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 DUSP12Q9UNI6 340 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 RAI2Q9Y5P3 530 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 MAD1L1Q9Y6D9 718 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 KIF26AQ9ULI4 1882 aaPredicted RBP14.35□□□□□ -0.11
SKA1-202ENST00000398452 PIEZO1Q92508 2521 aa14.35□□□□□ -0.11
SKA1-202ENST00000398452 CHD5Q8TDI0 1954 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 TTC24A2A3L6 582 aaPredicted RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 SDR42E2A6NKP2 422 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 TTC34A8MYJ7 566 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 NARSO43776 548 aaKnown RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 SYNCRIPO60506 623 aaKnown RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 RNASEH1O60930 286 aaKnown RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 SOCS5O75159 536 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 USP12O75317 370 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 NDST3O95803 873 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 PDGFBP01127 241 aaPredicted RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 FGF1P05230 155 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 EPHX1P07099 455 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 MYBL2P10244 700 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms