RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 OSBPL2Q9H1P3 480 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 SAV1Q9H4B6 383 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 ATP13A3Q9H7F0 1226 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CLIC5Q9NZA1 410 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 KIAA1551Q9HCM1 1747 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 SPAARA0A1B0GVQ0 90 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 HTR3EA5X5Y0 456 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 USP27XA6NNY8 438 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 PRG2P13727 222 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 MAPK1P28482 360 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CLPPQ16740 277 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 MAJINQ3KP22 176 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 KCTD21Q4G0X4 260 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 RTP2Q5QGT7 225 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 LY6G5CQ5SRR4 150 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 C9orf57Q5W0N0 161 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 PAQR7Q86WK9 346 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 C12orf40Q86WS4 652 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CROCCP3Q8IVE0 287 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 TRAPPC9Q96Q05 1148 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 MLPHQ9BV36 600 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 NIF3L1Q9GZT8 377 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 FAM192AQ9GZU8 254 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 Q9H521 79 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CHST7Q9NS84 486 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 HPF1Q9NWY4 346 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 DLGAP2Q9P1A6 1054 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 MBD2Q9UBB5 411 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 PRSS47A8MTI9 375 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 HYAL3O43820 417 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PABPC1P11940 636 aaKnown RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 CKMT2P17540 419 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 EID2Q8N6I1 236 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 FBXO30Q8TB52 745 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 CARD6Q9BX69 1037 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ANHXE9PGG2 379 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 UBXN8O00124 270 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 KLHL18O94889 574 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 OAZ2O95190 189 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 C5AR1P21730 350 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 LRRC74AQ0VAA2 488 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 COL9A2Q14055 689 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 UAP1Q16222 522 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 DCAF12L1Q5VU92 463 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PLEKHA7Q6IQ23 1121 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 AFAP1L2Q8N4X5 818 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 RAB7BQ96AH8 199 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 DCUN1D1Q96GG9 259 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TDRD1Q9BXT4 1180 aaKnown RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 DPH5Q9H2P9 285 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 RBM12Q9NTZ6 932 aaKnown RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 MED16Q9Y2X0 877 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 CAB39Q9Y376 341 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 LAMB2P55268 1798 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 E7EVH7 732 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 SLC7A4O43246 635 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 GFPT2O94808 682 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 CHEK2O96017 543 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 MT-CO3P00414 261 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 KRT3P12035 628 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 SYKP43405 635 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 SSTP61278 116 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 LGALS3BPQ08380 585 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TUBB2AQ13885 445 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 DDR2Q16832 855 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 CCDC142Q17RM4 750 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 Q3ZCU0 254 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ANKRD20A4Q4UJ75 823 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ANKRD20A8PQ5CZ79 823 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 EFHC2Q5JST6 749 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ANKRD20A2Q5SQ80 823 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ATAD3BQ5T9A4 648 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ANKRD20A1Q5TYW2 823 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ANKRD20A3Q5VUR7 823 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 KIAA0895LQ68EN5 471 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TXNDC8Q6A555 127 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TMEM35BQ8NCS4 154 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 GIMAP1Q8WWP7 306 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TUBB2BQ9BVA1 445 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 GPN2Q9H9Y4 310 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 MTF2Q9Y483 593 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TOR1BO14657 336 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 WBP4O75554 376 aaKnown RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 CDH3P22223 829 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 RABIFP47224 123 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 SLC9A3P48764 834 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 RASSF2P50749 326 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TSTA3Q13630 321 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 LONRF2Q1L5Z9 754 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PDCD4Q53EL6 469 aaKnown RBP8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PMS2CLQ68D20 193 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 ARHGEF18Q6ZSZ5 1173 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 KRT73Q86Y46 540 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 HPS6Q86YV9 775 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PM20D2Q8IYS1 436 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PPM1KQ8N3J5 372 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 LINC00469Q8N7U9 141 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 SHKBP1Q8TBC3 707 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PHF12Q96QT6 1004 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 PREBQ9HCU5 417 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms