RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 LMAN2Q12907 356 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 IFT88Q13099 833 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 CBLBQ13191 982 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 GEN1Q17RS7 908 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 PITRM1Q5JRX3 1037 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 EOGTQ5NDL2 527 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 SYCP2LQ5T4T6 812 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 TMCO4Q5TGY1 634 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 SYT13Q7L8C5 426 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 TAX1BP1Q86VP1 789 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 PYROXD2Q8N2H3 581 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 DCAF4L2Q8NA75 395 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 FBF1Q8TES7 1133 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 USP33Q8TEY7 942 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 LRRN4Q8WUT4 740 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 ALG14Q96F25 216 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 CABS1Q96KC9 395 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 OLFM3Q96PB7 478 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 DHRS4Q9BTZ2 278 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 FOXQ1Q9C009 403 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 KCNH6Q9H252 994 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 TRABDQ9H4I3 376 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 FBRSQ9HAH7 460 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 MLXIPLQ9NP71 852 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 ETNK2Q9NVF9 386 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 DTLQ9NZJ0 730 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 MPP6Q9NZW5 540 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 THAP10Q9P2Z0 257 aaPredicted RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 CLEC4EQ9ULY5 219 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 SLC8A2Q9UPR5 921 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 CHMP2BQ9UQN3 213 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 OR51B4Q9Y5P0 310 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 COL4A2P08572 1712 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 PRRT4C9JH25 899 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 PRPF4O43172 522 aaKnown RBP eCLIP10.34□□□□□ -0.751e-8■■□□□ 11.6
VPS53-202ENST00000389040 SPAG6O75602 509 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 CNTN5O94779 1100 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 AVPR2P30518 371 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 NTSR1P30989 418 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 STX2P32856 288 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 CCR3P51677 355 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 ECT2LQ008S8 904 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 EFTUD2Q15029 972 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS53-202ENST00000389040 POLD3Q15054 466 aaPredicted RBP10.34□□□□□ -0.75
VPS53-202ENST00000389040 FSCBQ5H9T9 825 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 FAXCQ5TGI0 409 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 MBLAC2Q68D91 279 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 RETSATQ6NUM9 610 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 BZW1Q7L1Q6 419 aaKnown RBP10.34□□□□□ -0.75
VPS53-202ENST00000389040 PIGWQ7Z7B1 504 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 IGDCC3Q8IVU1 814 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 CAMKK1Q8N5S9 505 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 OTUD6BQ8N6M0 293 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 ZNF513Q8N8E2 541 aaPredicted RBP10.34□□□□□ -0.75
VPS53-202ENST00000389040 CCDC197Q8NCU1 140 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 CCDC110Q8TBZ0 833 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 CKAP2Q8WWK9 683 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 MRRFQ96E11 262 aaKnown RBP10.34□□□□□ -0.75
VPS53-202ENST00000389040 SGSM3Q96HU1 749 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 SMC6Q96SB8 1091 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 PAFAH2Q99487 392 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 GABRG3Q99928 467 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 ACE2Q9BYF1 805 aaPredicted RBP10.34□□□□□ -0.75
VPS53-202ENST00000389040 MUC3BQ9H195 1237 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 VPS28Q9UK41 221 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 MTF2Q9Y483 593 aaPredicted RBP10.34□□□□□ -0.75
VPS53-202ENST00000389040 TEX264Q9Y6I9 313 aa10.34□□□□□ -0.75
VPS53-202ENST00000389040 TCP11X1B4DZS4 312 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 AVILO75366 819 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ZNF189O75820 626 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 APRTP07741 180 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 C7P10643 843 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ERCC2P18074 760 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 CD70P32970 193 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 SLC18A1P54219 525 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ST8SIA6P61647 398 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 KDSRQ06136 332 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 FAM182AQ5T1J6 154 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 RNF219Q5W0B1 726 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 AFMIDQ63HM1 303 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 HEATR6Q6AI08 1181 aaKnown RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 ADGRD1Q6QNK2 874 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 TFAP2DQ7Z6R9 452 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 C10orf67Q8IYJ2 551 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 CCDC33Q8N5R6 958 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ANKS4BQ8N8V4 417 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 GDAP1Q8TB36 358 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 TFB1MQ8WVM0 346 aaKnown RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 EZH1Q92800 747 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 MAGEB18Q96M61 343 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 CYTH2Q99418 400 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 CIPCQ9C0C6 399 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ETNK1Q9HBU6 452 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 C11orf16Q9NQ32 467 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 SAMD15Q9P1V8 674 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 SUN2Q9UH99 717 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 SMG5Q9UPR3 1016 aaKnown RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 HS3ST2Q9Y278 367 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 MFHAS1Q9Y4C4 1052 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 SNX10Q9Y5X0 201 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms