RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TBC1D25Q3MII6 688 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ATCAYQ86WG3 371 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SNX4O95219 450 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 H2AFXP16104 143 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 NFKB1P19838 968 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 CES5AQ6NT32 575 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 MCOLN2Q8IZK6 566 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 GMCL1Q96IK5 515 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PLEKHG4BQ96PX9 1271 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 MRPL57Q9BQC6 102 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 CRISPLD1Q9H336 500 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 OSGEPQ9NPF4 335 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 MRTO4Q9UKD2 239 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ATXN2Q99700 1313 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PGRMC2O15173 223 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 TRIM3O75382 744 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SCRN3Q0VDG4 424 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 STAG3L4Q8TBR4 150 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SLC2A14Q8TDB8 520 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 DNMT3LQ9UJW3 386 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 DNPEPQ9ULA0 475 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 IFT172Q9UG01 1749 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 A8MX80 341 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 GIMD1P0DJR0 217 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PKNOX1P55347 436 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 CES3Q6UWW8 571 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 VAT1Q99536 393 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SSR3Q9UNL2 185 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PCDHA11Q9Y5I1 949 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 CAPN6Q9Y6Q1 641 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 A0A0B4J269 797 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 CDK16Q00536 496 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 C5orf22Q49AR2 442 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 DEF8Q6ZN54 512 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF410Q86VK4 478 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ABHD14A-ACY1A0A1B0GW23 586 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 MAPK8P45983 427 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PFKPQ01813 784 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SRSF11Q05519 484 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 TNK2Q07912 1038 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SLC39A12Q504Y0 691 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 TRIM40Q6P9F5 258 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 KBTBD2Q8IY47 623 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 RNF148Q8N7C7 305 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 IPCEF1Q8WWN9 437 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 LENG1Q96BZ8 264 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 BHLHE41Q9C0J9 482 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SNTG2Q9NY99 539 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 SLIT1O75093 1534 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 MDM4O15151 490 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 GALNT18Q6P9A2 607 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF720Q7Z2F6 126 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 OR4A15Q8NGL6 344 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 KBTBD7Q8WVZ9 684 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PDGFDQ9GZP0 370 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 IGFLR1Q9H665 355 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 UMODL1Q5DID0 1318 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 H3BRB1 525 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 GCATO75600 419 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 HMGCRP04035 888 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 YBX3P16989 372 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ADSSP30520 456 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 TUBB3Q13509 450 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ACAP1Q15027 740 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 RFX4Q33E94 735 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 LSM12Q3MHD2 195 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 C16orf59Q7L2K0 433 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 GPR156Q8NFN8 814 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 TUT1Q9H6E5 874 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 ZFP14Q9HCL3 533 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PRDM8Q9NQV8 689 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 TMEM39AQ9NV64 488 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 C3orf18Q9UK00 162 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 R3HDM2Q9Y2K5 976 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 UGT2B17O75795 530 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 ERVK-24P63145 666 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 XKR6Q5GH73 641 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 TAS1R2Q8TE23 839 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SLC47A1Q96FL8 570 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 MARK4Q96L34 752 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 POPDC2Q9HBU9 364 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 XPNPEP3Q9NQH7 507 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 DHRS7Q9Y394 339 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SPTBP11277 2137 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 EIF2S3LQ2VIR3 472 aaKnown RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 NET1Q7Z628 596 aaPredicted RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 PRRG4Q9BZD6 226 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 PCDH12Q9NPG4 1184 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 MAT2BQ9NZL9 334 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 GPSM3Q9Y4H4 160 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 PRR36Q9H6K5 1346 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 AGRPO00253 132 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SERPINA1P01009 418 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 FTH1P02794 183 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 BICRALQ6AI39 1079 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 TPGS1Q6ZTW0 290 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 RASGEF1AQ8N9B8 481 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 PRDM16Q9HAZ2 1276 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 PSMD13Q9UNM6 376 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SCN8AQ9UQD0 1980 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms