RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CYP39A1Q9NYL5 469 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 TMOD4Q9NZQ9 345 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 JKAMPQ9P055 326 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 FOXJ2Q9P0K8 574 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 CTTNBP2NLQ9P2B4 639 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 LRIT1Q9P2V4 623 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 UVRAGQ9P2Y5 699 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 SLC9A2Q9UBY0 812 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 FAM153AQ9UHL3 310 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 NEU2Q9Y3R4 380 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 ALG6Q9Y672 507 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 STYXL1Q9Y6J8 313 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 MGAMO43451 1857 aa5.03□□□□□ -1.6
USP48-202ENST00000374730 ATXN2Q99700 1313 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 TRGV11A0A075B6L2 103 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 IGKV6D-21A0A0A0MT36 114 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 GOLGA8IPA6NC78 632 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 GOLGA8JA6NMD2 632 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 H0YGN5 161 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 TULP2O00295 520 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 HNRNPDLO14979 420 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 TTI1O43156 1089 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 HTRA2O43464 458 aaPredicted RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 XPOTO43592 962 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 PCDHGA12O60330 932 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 KATNA1O75449 491 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 SGPL1O95470 568 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 MYBL1P10243 752 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 EDNRBP24530 442 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 CHRNA3P32297 505 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 CTNNA1P35221 906 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 ARL2P36404 184 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 HSD17B3P37058 310 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 NAMPTP43490 491 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 FNTAP49354 379 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PEX5P50542 639 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 HMGCS2P54868 508 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 C21orf58P58505 322 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 MRPS35P82673 323 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 DR1Q01658 176 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 BIRC3Q13489 604 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 EMC2Q15006 297 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PSMD6Q15008 389 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ZRSR2Q15696 482 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 UAP1Q16222 522 aaPredicted RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 GFOD2Q3B7J2 385 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ZACNQ401N2 412 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 SEL1L2Q5TEA6 688 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 AGBL2Q5U5Z8 902 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 DUPD1Q68J44 220 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ACAD10Q6JQN1 1059 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 CXorf57Q6NSI4 855 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 PPP1R2P3Q6NXS1 205 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 SRLQ86TD4 932 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 CCDC60Q8IWA6 550 aaPredicted RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 ARFGAP2Q8N6H7 521 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ZNF564Q8TBZ8 553 aaPredicted RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 ACTRT2Q8TDY3 377 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 TAS1R2Q8TE23 839 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 POMGNT1Q8WZA1 660 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 KRT35Q92764 455 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ZKSCAN4Q969J2 545 aaPredicted RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 CCDC127Q96BQ5 260 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ZNF653Q96CK0 615 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 SAAL1Q96ER3 474 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 MRGPRX4Q96LA9 322 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ATP6V1G3Q96LB4 118 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 SH2D3AQ9BRG2 576 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ERP44Q9BS26 406 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 KIFC3Q9BVG8 833 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 TXLNGYQ9BZA5 131 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 TSPYL1Q9H0U9 437 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 POLR3FQ9H1D9 316 aaPredicted RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 NEUROG2Q9H2A3 272 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 DHX33Q9H6R0 707 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 TMBIM4Q9HC24 238 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 C1orf112Q9NSG2 853 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 HOXC10Q9NYD6 342 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 FBXO40Q9UH90 709 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PCYOX1Q9UHG3 505 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 AMACRQ9UHK6 382 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 RASAL2Q9UJF2 1139 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 SCAF8Q9UPN6 1271 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 UTP11Q9Y3A2 253 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 AFG3L2Q9Y4W6 797 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PCDHGA9Q9Y5G4 932 aaKnown RBP5.02□□□□□ -1.61
USP48-202ENST00000374730 PCDHGA8Q9Y5G5 932 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PCDHGA7Q9Y5G6 932 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PCDHGA6Q9Y5G7 932 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PCDHGA3Q9Y5H0 932 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 NFS1Q9Y697 457 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 PLXNA1Q9UIW2 1896 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 MCM3APO60318 1980 aa5.02□□□□□ -1.61
USP48-202ENST00000374730 ZNF541Q9H0D2 1346 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 RALGAPA2Q2PPJ7 1873 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 PRAMEF33A0A0G2JMD5 474 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 GOLGA6L10A6NI86 522 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 MASP2O00187 686 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 PODXLO00592 558 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 GABRDO14764 452 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms