RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 BRCA2P51587 3418 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 SOAT2O75908 522 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 YWHAQP27348 245 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 EPHA3P29320 983 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 DSC2Q02487 901 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 CUL3Q13618 768 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 RBM20Q5T481 1227 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 ZNF280DQ6N043 979 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 DEFB107AQ8IZN7 70 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 TEX26Q8N6G2 289 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 ATP6V0D2Q8N8Y2 350 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 BTN2A3PQ96KV6 586 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 PPP1R36Q96LQ0 422 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 CYP4F11Q9HBI6 524 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 CDH22Q9UJ99 828 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 SSX2IPQ9Y2D8 614 aa21.02■□□□□ 0.96
CCDC88B-203ENST00000359902 NEMP1O14524 444 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 SORBS2O94875 1100 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 CPB1P15086 417 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 CD1EP15812 388 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 EPHB1P54762 984 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 MRPL58Q14197 206 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 TRIP4Q15650 581 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 MAP3K21Q5TCX8 1036 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 MIB1Q86YT6 1006 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 PPFIBP2Q8ND30 876 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 MRPL57Q9BQC6 102 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 RTKNQ9BST9 563 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 NUF2Q9BZD4 464 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 SP110Q9HB58 689 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 CLIC5Q9NZA1 410 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 VTI1BQ9UEU0 232 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 ARHGAP26Q9UNA1 814 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 TTC24A2A3L6 582 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 FKBP6O75344 327 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 PDE5AO76074 875 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 SLC12A2P55011 1212 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 RAP1GAP2Q684P5 730 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 LMNTD2Q8IXW0 634 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 OR13J1Q8NGT2 312 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 PDCD6IPQ8WUM4 868 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 FBXO32Q969P5 355 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 FAM136AQ96C01 138 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 CNDP1Q96KN2 507 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 B3GALT6Q96L58 329 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 IGSF5Q9NSI5 407 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 PPM1HQ9ULR3 514 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 THSD7BQ9C0I4 1608 aa21.01■□□□□ 0.95
CCDC88B-203ENST00000359902 SLCO1B7G3V0H7 640 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 MAP3K7O43318 606 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 SERPINB5P36952 375 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 LEPRP48357 1165 aaKnown RBP21■□□□□ 0.95
CCDC88B-203ENST00000359902 FAM171A1Q5VUB5 890 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 CCNYL1Q8N7R7 359 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 TXNDC5Q8NBS9 432 aaKnown RBP21■□□□□ 0.95
CCDC88B-203ENST00000359902 CALML6Q8TD86 181 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 NDNQ99608 321 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 TTC1Q99614 292 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 OLFM1Q99784 485 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 MARCH2Q9P0N8 246 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 DRGXA6NNA5 263 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 PAPSS2O95340 614 aaPredicted RBP21■□□□□ 0.95
CCDC88B-203ENST00000359902 TNK2Q07912 1038 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 ASPHQ12797 758 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 ZRSR2Q15696 482 aaKnown RBP21■□□□□ 0.95
CCDC88B-203ENST00000359902 RASIP1Q5U651 963 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 AAGABQ6PD74 315 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 SPNS2Q8IVW8 549 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 KBTBD2Q8IY47 623 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 PGBD5Q8N414 524 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 STON2Q8WXE9 905 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 TADA1Q96BN2 335 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 SGF29Q96ES7 293 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 GLT1D1Q96MS3 346 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 GPR62Q9BZJ7 368 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 SLC27A5Q9Y2P5 690 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 VWA8A3KMH1 1905 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 HTTP42858 3142 aa21■□□□□ 0.95
CCDC88B-203ENST00000359902 CASP8AP2Q9UKL3 1982 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 EIF4E1BA6NMX2 242 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 SMNDC1O75940 238 aaKnown RBP eCLIP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 JUNP05412 331 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 PIK3R1P27986 724 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 ARPP19P56211 112 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 NSUN2Q08J23 767 aaKnown RBP eCLIP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 TAF10Q12962 218 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 C10orf120Q5SQS8 335 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 ZNF354CQ86Y25 554 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 CPSF7Q8N684 471 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 PNPLA1Q8N8W4 532 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 KDM1BQ8NB78 822 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 ARRDC2Q8TBH0 407 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 S100A14Q9HCY8 104 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 ABT1Q9ULW3 272 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 LRCH1Q9Y2L9 728 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 MIA3Q5JRA6 1907 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 MROH6A6NGR9 719 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 NPHS1O60500 1241 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms