RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SLCO2A1Q92959 643 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 RBM41Q96IZ5 413 aaKnown RBP7.18□□□□□ -1.26
VPS13A-201ENST00000355766 CEP295NLQ96MC4 621 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 TWNKQ96RR1 684 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 TBCBQ99426 244 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 FRMD8P1Q9BZ68 369 aaPredicted RBP7.18□□□□□ -1.26
VPS13A-201ENST00000355766 SYNCQ9H7C4 482 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 PRDM16Q9HAZ2 1276 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 GCM1Q9NP62 436 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 TMEM74BQ9NUR3 256 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 DDX56Q9NY93 547 aaKnown RBP7.18□□□□□ -1.26
VPS13A-201ENST00000355766 DKK4Q9UBT3 224 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 HMGXB4Q9UGU5 601 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 MBD1Q9UIS9 605 aaPredicted RBP7.18□□□□□ -1.26
VPS13A-201ENST00000355766 ZMYM5Q9UJ78 669 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 TSPAN16Q9UKR8 245 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 CDH9Q9ULB4 789 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 L1RE1Q9UN81 338 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 KALRNO60229 2985 aa7.18□□□□□ -1.26
VPS13A-201ENST00000355766 OR6C75A6NL08 312 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 XPO1O14980 1071 aaKnown RBP7.17□□□□□ -1.26
VPS13A-201ENST00000355766 SOAT2O75908 522 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 FBXO21O94952 628 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 OAZ2O95190 189 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CFIP05156 583 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 FTH1P19P0C7X4 201 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 KRT3P12035 628 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CD59P13987 128 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 GJA4P35212 333 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 AVPR1AP37288 418 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 FNTAP49354 379 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 GUCY2FP51841 1108 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF143P52747 638 aaPredicted RBP7.17□□□□□ -1.26
VPS13A-201ENST00000355766 RNF4P78317 190 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 SMARCB1Q12824 385 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 GPR17Q13304 367 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 DHX34Q14147 1143 aaKnown RBP7.17□□□□□ -1.26
VPS13A-201ENST00000355766 VEPH1Q14D04 833 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 PDGFRLQ15198 375 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CYP1B1Q16678 543 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 ERCC6LQ2NKX8 1250 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 TEX35Q5T0J7 233 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 C8orf74Q6P047 294 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 DENND1BQ6P3S1 775 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 DCUN1D2Q6PH85 259 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 BEND5Q7L4P6 421 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 MAATS1Q7Z4T9 603 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 TMC3Q7Z5M5 1100 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 DNAJB7Q7Z6W7 309 aaPredicted RBP7.17□□□□□ -1.26
VPS13A-201ENST00000355766 METTL23Q86XA0 190 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 XYLT1Q86Y38 959 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 PSTKQ8IV42 348 aaKnown RBP7.17□□□□□ -1.26
VPS13A-201ENST00000355766 PASD1Q8IV76 773 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CMTM8Q8IZV2 173 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CPA6Q8N4T0 437 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 WDTC1Q8N5D0 677 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 MINDY1Q8N5J2 469 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 B3GALNT2Q8NCR0 500 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 OR6B3Q8NGW1 331 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 EXD1Q8NHP7 514 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CCDC26Q8TAB7 109 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 USP33Q8TEY7 942 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 SLC35F5Q8WV83 523 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 TCTN2Q96GX1 697 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 SENP8Q96LD8 212 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 ACBD6Q9BR61 282 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 MRPL45Q9BRJ2 306 aaKnown RBP7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CNPY3Q9BT09 278 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 GTPBP2Q9BX10 602 aaKnown RBP7.17□□□□□ -1.26
VPS13A-201ENST00000355766 SLC46A2Q9BY10 475 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 FOXP3Q9BZS1 431 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CAPN10Q9HC96 672 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 FSCN3Q9NQT6 498 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 HSFX1Q9UBD0 423 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 MMP17Q9ULZ9 603 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 CCL26Q9Y258 94 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 PCDHB14Q9Y5E9 798 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 SDK1Q7Z5N4 2213 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 KIAA1549LQ6ZVL6 1849 aa7.17□□□□□ -1.26
VPS13A-201ENST00000355766 TSC2P49815 1807 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 A0A087WV48 116 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CYB561D2O14569 222 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 NDC80O14777 642 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 PPEF2O14830 753 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CEP104O60308 925 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 HSF2BPO75031 334 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 SRGAP2O75044 1071 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 SERPINF2P08697 491 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 ATF6P18850 670 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 DDX6P26196 483 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CHRNA3P32297 505 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 PTPN9P43378 593 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 AIF1P55008 147 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CDH8P55286 799 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 PSMC1P62191 440 aaKnown RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CUL1Q13616 776 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 MESDQ14696 234 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 TRIP6Q15654 476 aaKnown RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CRY1Q16526 586 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms