RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 C22orf39Q6P5X5 142 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 LEKR1Q6ZMV7 388 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 ARL10Q8N8L6 244 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 Q8N9G6 341 aaPredicted RBP11.39□□□□□ -0.59
RTN3-204ENST00000354497 USP7Q93009 1102 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 TMEM74Q96NL1 305 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 C2orf49Q9BVC5 232 aaPredicted RBP11.39□□□□□ -0.59
RTN3-204ENST00000354497 SUDS3Q9H7L9 328 aaPredicted RBP11.39□□□□□ -0.59
RTN3-204ENST00000354497 LRRC4CQ9HCJ2 640 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 FOXJ2Q9P0K8 574 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 VPS51Q9UID3 782 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 RABGEF1Q9UJ41 708 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 ACSL6Q9UKU0 697 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 HS3ST2Q9Y278 367 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 OR51B4Q9Y5P0 310 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 FADS3Q9Y5Q0 445 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 BOD1L1Q8NFC6 3051 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 LMO7DNF2Z398 122 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 M0QYT0 321 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 RNF225M0QZC1 329 aaPredicted RBP11.38□□□□□ -0.59
RTN3-204ENST00000354497 NVLO15381 856 aaKnown RBP11.38□□□□□ -0.59
RTN3-204ENST00000354497 CLDN11O75508 207 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 SLC2A3P11169 496 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 TSHRP16473 764 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 CDC25BP30305 580 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 CCR1P32246 355 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 ACADSBP45954 432 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 POLE2P56282 527 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 LSM11P83369 360 aaKnown RBP eCLIP11.38□□□□□ -0.59
RTN3-204ENST00000354497 CDK17Q00537 523 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 NME3Q13232 169 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 MORC3Q14149 939 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 BORAQ6PGQ7 559 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 DPY19L3Q6ZPD9 716 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 VPS36Q86VN1 386 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 REXO1L1PQ8IX06 675 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 PPM1KQ8N3J5 372 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 GUF1Q8N442 669 aaKnown RBP11.38□□□□□ -0.59
RTN3-204ENST00000354497 RYBPQ8N488 228 aaPredicted RBP11.38□□□□□ -0.59
RTN3-204ENST00000354497 FAM26EQ8N5C1 309 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 PCDH19Q8TAB3 1148 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 SCG3Q8WXD2 468 aaKnown RBP11.38□□□□□ -0.59
RTN3-204ENST00000354497 NT5C1BQ96P26 610 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 KCNK17Q96T54 332 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 PSMB7Q99436 277 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 EPAS1Q99814 870 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 CLPBQ9H078 707 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 SIK2Q9H0K1 926 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 ZDHHC6Q9H6R6 413 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 ITM2BQ9Y287 266 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 KIF26BQ2KJY2 2108 aa11.38□□□□□ -0.59
RTN3-204ENST00000354497 A0A1B0GVL5 298 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 CNTN5O94779 1100 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 RHOBTB3O94955 611 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 MYL1P05976 194 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 CTSEP14091 401 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 PFKFB1P16118 471 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 ITGB7P26010 798 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 ETV5P41161 510 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 CDH4P55283 916 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 PFN3P60673 137 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 YWHAZP63104 245 aaKnown RBP11.37□□□□□ -0.59
RTN3-204ENST00000354497 PPARDQ03181 441 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 TAF5Q15542 800 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 PHF19Q5T6S3 580 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 DENND1BQ6P3S1 775 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 PARS2Q7L3T8 475 aaKnown RBP11.37□□□□□ -0.59
RTN3-204ENST00000354497 RD3Q7Z3Z2 195 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 SMYD4Q8IYR2 804 aaPredicted RBP11.37□□□□□ -0.59
RTN3-204ENST00000354497 NEK11Q8NG66 645 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 KAT5Q92993 513 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 SMARCE1Q969G3 411 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 KLF6Q99612 283 aaPredicted RBP11.37□□□□□ -0.59
RTN3-204ENST00000354497 ADNPQ9H2P0 1102 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 LRRN3Q9H3W5 708 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 GGT7Q9UJ14 662 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 PNMA8BQ9ULN7 279 aaPredicted RBP11.37□□□□□ -0.59
RTN3-204ENST00000354497 GPR34Q9UPC5 381 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 HS3ST4Q9Y661 456 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 RPS6KL1Q9Y6S9 549 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 TEX15Q9BXT5 2789 aa11.37□□□□□ -0.59
RTN3-204ENST00000354497 A0A1W2PQM1 296 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 E5RJQ4 531 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 IGLV3-25P01717 112 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 L1CAMP32004 1257 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 CCKBRP32239 447 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 CASRP41180 1078 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 ELOCQ15369 112 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 EDRF1Q3B7T1 1238 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 ZCWPW2Q504Y3 356 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 AP1ARQ63HQ0 302 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 TMCO3Q6UWJ1 677 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 BEND5Q7L4P6 421 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 RRAGAQ7L523 313 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 HID1Q8IV36 788 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 DEFB106AQ8N104 65 aa11.36□□□□□ -0.59
RTN3-204ENST00000354497 FSTL5Q8N475 847 aaPredicted RBP11.36□□□□□ -0.59
RTN3-204ENST00000354497 INTS4Q96HW7 963 aaKnown RBP11.36□□□□□ -0.59
RTN3-204ENST00000354497 LENG8Q96PV6 779 aaPredicted RBP11.36□□□□□ -0.59
RTN3-204ENST00000354497 MED15Q96RN5 788 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms