RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 FAXDC2Q96IV6 333 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 MYCBPQ99417 103 aaPredicted RBP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 HSD3B7Q9H2F3 369 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CCDC167Q9P0B6 97 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3DA0A087WVF3 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3IA0A087WXS9 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3EA0A087X179 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3KA0A087X1G2 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3FA6NER0 549 aaPredicted RBP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CCDC154A6NI56 674 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3LB9A6J9 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3HP0C7X1 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 L1CAMP32004 1257 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 POU5F1Q01860 360 aaKnown RBP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 GNA12Q03113 381 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TRIP4Q15650 581 aaPredicted RBP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3GQ6DHY5 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3CQ6IPX1 549 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CNKSR3Q6P9H4 555 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 SAPCD2Q86UD0 394 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D3Q8IZP1 549 aaPredicted RBP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CXorf40BQ96DE9 158 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 PAWRQ96IZ0 340 aaKnown RBP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TSC22D3Q99576 134 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 COPS8Q99627 209 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TNKS2Q9H2K2 1166 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 VPS45Q9NRW7 570 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 RNF186Q9NXI6 227 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 RAI2Q9Y5P3 530 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 ANKDD1BA6NHY2 528 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 MAGEC1O60732 1142 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 ALBP02768 609 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CDH4P55283 916 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 ACSM2AQ08AH3 577 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 ACSM2BQ68CK6 577 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 QKIQ96PU8 341 aaKnown RBP eCLIP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CNTN3Q9P232 1028 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 TLL2Q9Y6L7 1015 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 HNRNPRO43390 633 aaKnown RBP15.01□□□□□ -0.01
COL17A1-201ENST00000353479 DCXO43602 365 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 SLC10A3P09131 477 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 HTR1BP28222 390 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CENPAP49450 140 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 GPR15P49685 360 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 DSC2Q02487 901 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 CLEC20AQ6ZU45 233 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 BBS7Q8IWZ6 715 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 FAM126BQ8IXS8 530 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 SELENOMQ8WWX9 145 aa15.01□□□□□ -0.01
COL17A1-201ENST00000353479 A0A1B0GVM2 712 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 TCAF2A6NFQ2 919 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 PTPN4P29074 926 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 YBEYP58557 167 aaPredicted RBP15□□□□□ -0.01
COL17A1-201ENST00000353479 WLSQ5T9L3 541 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 LRRC8BQ6P9F7 803 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 LRRC57Q8N9N7 239 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 WDR48Q8TAF3 677 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 PRCCQ92733 491 aaPredicted RBP15□□□□□ -0.01
COL17A1-201ENST00000353479 HMCESQ96FZ2 354 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 FUBP3Q96I24 572 aaKnown RBP eCLIP15□□□□□ -0.01
COL17A1-201ENST00000353479 ABCG8Q9H221 673 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 ZFYVE1Q9HBF4 777 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 CDV3Q9UKY7 258 aaKnown RBP15□□□□□ -0.01
COL17A1-201ENST00000353479 BLOC1S6Q9UL45 172 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 VPS4BO75351 444 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 AMD1P17707 334 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 ATP5F1P24539 256 aaPredicted RBP15□□□□□ -0.01
COL17A1-201ENST00000353479 CRTC3Q6UUV7 619 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 P3H2Q8IVL5 708 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 ZNF296Q8WUU4 475 aaPredicted RBP15□□□□□ -0.01
COL17A1-201ENST00000353479 INPP5DQ92835 1189 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 IL1RAPL1Q9NZN1 696 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 ZW10O43264 779 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 UNGP13051 313 aaPredicted RBP15□□□□□ -0.01
COL17A1-201ENST00000353479 PWP1Q13610 501 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 TRIM60Q495X7 471 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 SH3PXD2AQ5TCZ1 1133 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 SYT12Q8IV01 421 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 EPHX1P07099 455 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 TSPAN8P19075 237 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 CCNCP24863 283 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 GPD2P43304 727 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 GRM3Q14832 879 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 DIS3LQ8TF46 1054 aaKnown RBP15□□□□□ -0.01
COL17A1-201ENST00000353479 OLFM3Q96PB7 478 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 SNX15Q9NRS6 342 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 FBXW11Q9UKB1 542 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 FZD10Q9ULW2 581 aa15□□□□□ -0.01
COL17A1-201ENST00000353479 BCLAF3A2AJT9 711 aaKnown RBP14.99□□□□□ -0.01
COL17A1-201ENST00000353479 EML3Q32P44 896 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 CYP20A1Q6UW02 462 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 PACS1Q6VY07 963 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 ATL1Q8WXF7 558 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 BBS4Q96RK4 519 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 SIKE1Q9BRV8 207 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 CAB39LQ9H9S4 337 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 QSOX1O00391 747 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 IFNA14P01570 189 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 ATP6V1B2P21281 511 aa14.99□□□□□ -0.01
COL17A1-201ENST00000353479 HTR7P34969 479 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms