RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 COL28A1Q2UY09 1125 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 PID1Q7Z2X4 250 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ZNF557Q8N988 423 aaPredicted RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 THAP6Q8TBB0 222 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 AGAP3Q96P47 875 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 SPATA5L1Q9BVQ7 753 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 CLUHO75153 1309 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 FOCADQ5VW36 1801 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 PVALEFA0A1B0GWK0 134 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 SASH3O75995 380 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 TFRCP02786 760 aaKnown RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 GALCP54803 685 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 LIPEQ05469 1076 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 SLC27A3Q5K4L6 730 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 AKR1C8PQ5T2L2 129 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ZCCHC12Q6PEW1 402 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 SENP6Q9GZR1 1112 aaPredicted RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 IGSF9Q9P2J2 1179 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ABCB11O95342 1321 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ARL5CA6NH57 179 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 NPIPA7E9PJI5 369 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ITGA10O75578 1167 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 NPIPA8P0DM63 369 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 LHCGRP22888 699 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ACADSBP45954 432 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 CDK9P50750 372 aaKnown RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 OSTNP61366 133 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 GCKRQ14397 625 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 PON3Q15166 354 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 PRAMEF17Q5VTA0 474 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 CDCA5Q96FF9 252 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ABCG8Q9H221 673 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ARHGEF4Q9NR80 690 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 AHSPQ9NZD4 102 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 MARK1Q9P0L2 795 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 PITPNM1O00562 1244 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 BHLHE40O14503 412 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 HLA-DQA2P01906 255 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 COX4I1P13073 169 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 PPP2R2BQ00005 443 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 CSTF1Q05048 431 aaKnown RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 CERKLQ49MI3 558 aaPredicted RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 N4BP2L1Q5TBK1 243 aaPredicted RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 PIWIL2Q8TC59 973 aaKnown RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 TRIM43Q96BQ3 446 aaPredicted RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 PRDM16Q9HAZ2 1276 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 PTGFRNQ9P2B2 879 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 ITGA11Q9UKX5 1188 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 RGPD2P0DJD1 1756 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 CD109Q6YHK3 1445 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 A0A0A6YYK5 440 aaPredicted RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 BNIP3LO60238 219 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 RSL1D1O76021 490 aaKnown RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 ADAMTS2O95450 1211 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 IL7P13232 177 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 COMTP21964 271 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 IL4RP24394 825 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 MMP14P50281 582 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 UGT2B15P54855 530 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 DNAJB14Q8TBM8 379 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 TPK1Q9H3S4 243 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 IFT80Q9P2H3 777 aaPredicted RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 DRG1Q9Y295 367 aaKnown RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 SAMHD1Q9Y3Z3 626 aaKnown RBP6.21□□□□□ -1.42
VCAN-203ENST00000343200 ARL5AQ9Y689 179 aa6.21□□□□□ -1.42
VCAN-203ENST00000343200 EME2A4GXA9 379 aaPredicted RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 PDE8AO60658 829 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 HIST1H2ABP04908 130 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 RPLP0P05388 317 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 EIF4BP23588 611 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 CD6P30203 668 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 DPP8Q6V1X1 898 aaPredicted RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 HIST3H2AQ7L7L0 130 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 CD300LFQ8TDQ1 290 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 TCP10LQ8TDR4 215 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 HIST1H2ACQ93077 130 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 EDC3Q96F86 508 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 RRNAD1Q96FB5 475 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 ZNF560Q96MR9 790 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 MAN2B2Q9Y2E5 1009 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 TRAF6Q9Y4K3 522 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 HSPB11Q9Y547 144 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 PREX2Q70Z35 1606 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 AP2A2O94973 939 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 NCS1P62166 190 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 SNAPC1Q16533 368 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 USPL1Q5W0Q7 1092 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.2□□□□□ -1.42
VCAN-203ENST00000343200 CD302Q8IX05 232 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 OR6B3Q8NGW1 331 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 GANQ9H2C0 597 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 RBAKQ9NYW8 714 aaPredicted RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 A0A087X1B8 175 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 EEF2KO00418 725 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 NARSO43776 548 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 SHOX2O60902 331 aaPredicted RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 CHMP24386 653 aa6.2□□□□□ -1.42
VCAN-203ENST00000343200 RPL9P32969 192 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 RPL14P50914 215 aaKnown RBP6.2□□□□□ -1.42
VCAN-203ENST00000343200 PRKCEQ02156 737 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms