RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 NHSQ6T4R5 1651 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 A0A1W2PQH9 124 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 RGSL1A5PLK6 1076 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 A6NHS1 94 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 TTC36A6NLP5 189 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 H3BMM5 538 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 FFAR3O14843 346 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 GPR42O15529 346 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 CNMDO75829 334 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 AP2A1O95782 977 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 ZNF23P17027 643 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 TPSB2P20231 275 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 EEF1DP29692 281 aaKnown RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 DAOAP59103 153 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 TPSAB1Q15661 275 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 CCDC153Q494R4 210 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 LINGO4Q6UY18 593 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 CYP4V2Q6ZWL3 525 aaPredicted RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 FRA10AC1Q70Z53 315 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 ZNF598Q86UK7 904 aaKnown RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 BRI3BPQ8WY22 251 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 VPS33AQ96AX1 596 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 CCDC138Q96M89 665 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 TM6SF2Q9BZW4 377 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 ARMC7Q9H6L4 198 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 CYLDQ9NQC7 956 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 LATS2Q9NRM7 1088 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 SUN2Q9UH99 717 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 DOLKQ9UPQ8 538 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 HEMK1Q9Y5R4 338 aaPredicted RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 GSTA4O15217 222 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 MAN1A2O60476 641 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 PROZP22891 400 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 GJA5P36382 358 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 YAP1P46937 504 aaKnown RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 TMED10P49755 219 aaKnown RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 DDX39BQ13838 428 aaKnown RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 KYAT1Q16773 422 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 UGP2Q16851 508 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 TBCELQ5QJ74 424 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 C14orf80Q86SX3 495 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 RALGPS2Q86X27 583 aaPredicted RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 ARNTL2Q8WYA1 636 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 MCM3APO60318 1980 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 IGKV6-21A0A0C4DH24 114 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 PABPN1LA6NDY0 278 aaKnown RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 ITGB1P05556 798 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 PTPN9P43378 593 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 GALK1P51570 392 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 RAB10P61026 200 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 GRIK3Q13003 919 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 ATP1A4Q13733 1029 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 HSF5Q4G112 596 aaPredicted RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 STRADAQ7RTN6 431 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 SPPL2CQ8IUH8 684 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 LPGAT1Q92604 370 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 PSMG2Q969U7 264 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 SMARCD1Q96GM5 515 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 MLPHQ9BV36 600 aaPredicted RBP12.04□□□□□ -0.48
USP1-201ENST00000339950 CCDC106Q9BWC9 280 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 IL22Q9GZX6 179 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 COL4A5P29400 1685 aa12.04□□□□□ -0.48
USP1-201ENST00000339950 MAGEC1O60732 1142 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 ZNF189O75820 626 aaPredicted RBP12.03□□□□□ -0.48
USP1-201ENST00000339950 ANXA9O76027 345 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 RPL17P18621 184 aaKnown RBP12.03□□□□□ -0.48
USP1-201ENST00000339950 EDNRBP24530 442 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 CREB5Q02930 508 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 SLC10A7Q0GE19 358 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 PPIL2Q13356 520 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 PTPRRQ15256 657 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 AGAP9Q5VTM2 703 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 FAM171A1Q5VUB5 890 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 IL23RQ5VWK5 629 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 MARK2Q7KZI7 788 aaKnown RBP12.03□□□□□ -0.48
USP1-201ENST00000339950 TRIM74Q86UV6 250 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 TRIM73Q86UV7 250 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 LRRC52Q8N7C0 313 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 LPCAT1Q8NF37 534 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 ST13P5Q8NFI4 369 aaPredicted RBP12.03□□□□□ -0.48
USP1-201ENST00000339950 CDK15Q96Q40 435 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 PKP2Q99959 881 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 H0Y626 953 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 CNTN5O94779 1100 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 TRIM16O95361 564 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 CNTFP26441 200 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 INCA1Q0VD86 236 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 TMTC4Q5T4D3 741 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 LIPMQ5VYY2 423 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 TTC33Q6PID6 262 aaPredicted RBP12.03□□□□□ -0.48
USP1-201ENST00000339950 ZNF410Q86VK4 478 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 CLEC4FQ8N1N0 589 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 OR13C4Q8NGS5 318 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 CLHC1Q8NHS4 586 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 MUC3BQ9H195 1237 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 ZNF180Q9UJW8 692 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 RNF112Q9ULX5 631 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 TRAFD1O14545 582 aaPredicted RBP12.03□□□□□ -0.48
USP1-201ENST00000339950 BIRC5O15392 142 aa12.03□□□□□ -0.48
USP1-201ENST00000339950 HSPA8P11142 646 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms