RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CSE1LP55060 971 aaKnown RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 MSLNQ13421 630 aaPredicted RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 TSTD2Q5T7W7 516 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 PDE12Q6L8Q7 609 aaKnown RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ADGRD2Q7Z7M1 963 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 APCDD1Q8J025 514 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 DCLK2Q8N568 766 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 LEMD2Q8NC56 503 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 RIN3Q8TB24 985 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 LRRC8CQ8TDW0 803 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 SPOCK2Q92563 424 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 USP13Q92995 863 aaPredicted RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ALG14Q96F25 216 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 NSMCE3Q96MG7 304 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 CLEC4EQ9ULY5 219 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 YBX2Q9Y2T7 364 aaKnown RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 CCDC195A0A1B0GUA6 201 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 TOP3BO95985 862 aaKnown RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 EPOP01588 193 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 CYBBP04839 570 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 TYK2P29597 1187 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ETV4P43268 484 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ERVK-21P61565 698 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 THOC5Q13769 683 aaKnown RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 SLC14A2Q15849 920 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 MPP7Q5T2T1 576 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ARMC3Q5W041 872 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 FSTL4Q6MZW2 842 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 FAM47EQ6ZV65 393 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 DENND6AQ8IWF6 608 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 CACNA2D3Q8IZS8 1091 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 BLOC1S5Q8TDH9 187 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ACMSDQ8TDX5 336 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 SEC16BQ96JE7 1060 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 NUDCD1Q96RS6 583 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ELAC2Q9BQ52 826 aaKnown RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 C2orf49Q9BVC5 232 aaPredicted RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 TDP1Q9NUW8 608 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ZDHHC7Q9NXF8 308 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 CHKBQ9Y259 395 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 FCF1Q9Y324 198 aaKnown RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 PLLPQ9Y342 182 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 CHD9Q3L8U1 2897 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 TIMM44O43615 452 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 PRAMEF12O95522 483 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 NDST3O95803 873 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 PIRTP0C851 137 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 CRHR1P34998 444 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 PBX2P40425 430 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 SERPINB8P50452 374 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 RHOAP61586 193 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 LMAN2Q12907 356 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 PDE1CQ14123 709 aaPredicted RBP13.5□□□□□ -0.25
HMGB1-202ENST00000339872 PRSS36Q5K4E3 855 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 MICALCLQ6ZW33 695 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 CMC1Q7Z7K0 106 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 CNTN4Q8IWV2 1026 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 CNPY4Q8N129 248 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 ING5Q8WYH8 240 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 PTPRN2Q92932 1015 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 VPS39Q96JC1 886 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 TRIB3Q96RU7 358 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 SNX15Q9NRS6 342 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 LHX3Q9UBR4 397 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 DPP7Q9UHL4 492 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 MYOFQ9NZM1 2061 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 BPTFQ12830 3046 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 DHRS4L1P0CG22 281 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 CES1P23141 567 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 CD70P32970 193 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 SLC1A2P43004 574 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 MPP1Q00013 466 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 CTBP1Q13363 440 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 INO80DQ53TQ3 878 aaPredicted RBP13.5□□□□□ -0.25
HMGB1-202ENST00000339872 FYB2Q5VWT5 728 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 ZNF470Q6ECI4 717 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 RGS9BPQ6ZS82 235 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 ARMC2Q8NEN0 867 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 OR13J1Q8NGT2 312 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 ZNF707Q96C28 371 aaPredicted RBP13.5□□□□□ -0.25
HMGB1-202ENST00000339872 RMDN1Q96DB5 314 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 FAM167BQ9BTA0 163 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 MCMBPQ9BTE3 642 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 TDRD1Q9BXT4 1180 aaKnown RBP13.5□□□□□ -0.25
HMGB1-202ENST00000339872 VPS11Q9H270 941 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.5□□□□□ -0.256e-6■■□□□ 13.9
HMGB1-202ENST00000339872 GGT7Q9UJ14 662 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 MTO1Q9Y2Z2 717 aaKnown RBP13.5□□□□□ -0.25
HMGB1-202ENST00000339872 PCDHGC4Q9Y5F7 938 aa13.5□□□□□ -0.25
HMGB1-202ENST00000339872 MROH6A6NGR9 719 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 LDB2O43679 373 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 PAPSS2O95340 614 aaPredicted RBP13.49□□□□□ -0.25
HMGB1-202ENST00000339872 MT-CO1P00395 513 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 CEBPBP17676 345 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 UGP2Q16851 508 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 PPM1JQ5JR12 505 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 RETSATQ6NUM9 610 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 FIBINQ8TAL6 211 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 ZNF75CPQ92670 426 aaPredicted RBP13.49□□□□□ -0.25
HMGB1-202ENST00000339872 RHOJQ9H4E5 214 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms