RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZCWPW2A0A1B0GU75 182 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 CILPO75339 1184 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 PROZP22891 400 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 PLK1P53350 603 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 CAPRIN1Q14444 709 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 PID1Q7Z2X4 250 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 CAMK1DQ8IU85 385 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 OR2T34Q8NGX1 318 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 OR2T3Q8NH03 318 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 SPPL2BQ8TCT7 592 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 NXNL1Q96CM4 212 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 CENPOQ9BU64 300 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 C1QTNF1Q9BXJ1 281 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 SPON1Q9HCB6 807 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 OGTO15294 1046 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 CHRM3P20309 590 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 NDST1P52848 882 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 RAD23AP54725 363 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 USP10Q14694 798 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 TMEM132AQ24JP5 1023 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 DALRD3Q5D0E6 543 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 DEPDC1Q5TB30 811 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 ZNF567Q8N184 647 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 TNIP2Q8NFZ5 429 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 EIF2AQ9BY44 585 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 OSBPL2Q9H1P3 480 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 SLC38A10Q9HBR0 1119 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 IFT80Q9P2H3 777 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 ZNF70Q9UC06 446 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 GIMAP2Q9UG22 337 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 TLK1Q9UKI8 766 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 ITGB1BP2Q9UKP3 347 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 ZFC3H1O60293 1989 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 MTHFD1P11586 935 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 SPCS2Q15005 226 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 RETREG3Q86VR2 466 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 IFNEQ86WN2 208 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 CENPLQ8N0S6 344 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 NDRG1Q92597 394 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 ANKRD36BP1Q96IX9 119 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 LHPPQ9H008 270 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 GBA3Q9H227 469 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 GBA2Q9HCG7 927 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 ATAD3AQ9NVI7 634 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 KLQ9UEF7 1012 aa13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 PTBP2Q9UKA9 531 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-201ENST00000331194 WNT10BO00744 389 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 SYNCRIPO60506 623 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 XYLBO75191 536 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 CLPXO76031 633 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ESRRBO95718 433 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 MPOP05164 745 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 MLNP12872 115 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 CCND2P30279 289 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 RAB15P59190 212 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 CLPPQ16740 277 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 PHKG1Q16816 387 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ANO4Q32M45 955 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 TBPL2Q6SJ96 375 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ABRAXAS1Q6UWZ7 409 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 PRR23BQ6ZRT6 265 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 FAM131BQ86XD5 332 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ZNF280CQ8ND82 737 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ABHD11Q8NFV4 315 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 USP33Q8TEY7 942 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ITPKCQ96DU7 683 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 BCO2Q9BYV7 579 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 EHD1Q9H4M9 534 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ZNF302Q9NR11 478 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 TMEM181Q9P2C4 612 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 CTDP1Q9Y5B0 961 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 NUP205Q92621 2012 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 FER1L6Q2WGJ9 1857 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 NFKBIEO00221 500 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 ACOX3O15254 700 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 PLA2G6O60733 806 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 NOL3O60936 208 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 SUPT20HL2P0C7V6 817 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 HPCAL1P37235 193 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 GJA9P57773 515 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 STX5Q13190 355 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 OXA1LQ15070 435 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 SUPT20HL1Q3ZLR7 823 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 CYBRD1Q53TN4 286 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 KCNMB4Q86W47 210 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 RNF135Q8IUD6 432 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 CEP97Q8IW35 865 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 PELI3Q8N2H9 469 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 MFSD2AQ8NA29 543 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 TXNDC5Q8NBS9 432 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 RNF149Q8NC42 400 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 SLC7A14Q8TBB6 771 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 DNMT3BQ9UBC3 853 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 TRAF6Q9Y4K3 522 aa13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 TNS1Q9HBL0 1735 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-201ENST00000331194 DHRS12A0PJE2 317 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 TRIM64A6NGJ6 449 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 NME4O00746 187 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 UBDO15205 165 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms