RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 CDH22Q9UJ99 828 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 CHKBQ9Y259 395 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 PCDHGC4Q9Y5F7 938 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 TNRC18O15417 2968 aaPredicted RBP18.6■□□□□ 0.57
USP39-201ENST00000323701 TPP1O14773 563 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 SMAD6O43541 496 aaKnown RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 BUD23O43709 281 aaKnown RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 PRLP01236 227 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 PDHA1P08559 390 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 SERPINF2P08697 491 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 GP5P40197 560 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 ETV4P43268 484 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 SERPINB9P50453 376 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 PTPRRQ15256 657 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 PPM1JQ5JR12 505 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 ASTLQ6HA08 431 aaPredicted RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 ZNF449Q6P9G9 518 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 ZNF783Q6ZMS7 281 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 OR13J1Q8NGT2 312 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 LRRC3BQ96PB8 259 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 FAM111AQ96PZ2 611 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 SRPK1Q96SB4 655 aaKnown RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 CPNE1Q99829 537 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 LHX3Q9UBR4 397 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 E2F8A0AVK6 867 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 TYW5A2RUC4 315 aaKnown RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 INSIG1O15503 277 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 VIMP08670 466 aaKnown RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 HNRNPA1P09651 372 aaKnown RBP eCLIP18.59■□□□□ 0.57
USP39-201ENST00000323701 TAC1P20366 129 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 CCNFP41002 786 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 CTBP1Q13363 440 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 ATXN7L2Q5T6C5 722 aaPredicted RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 LGSNQ5TDP6 509 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 RNF43Q68DV7 783 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 TMC5Q6UXY8 1006 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 SPNS2Q8IVW8 549 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 MTBPQ96DY7 904 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 FEM1CQ96JP0 617 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 RBBP8Q99708 897 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 NKX2-4Q9H2Z4 354 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 ZNF510Q9Y2H8 683 aa18.59■□□□□ 0.57
USP39-201ENST00000323701 MTO1Q9Y2Z2 717 aaKnown RBP18.59■□□□□ 0.57
USP39-201ENST00000323701 WDR91A4D1P6 747 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 MYO1CO00159 1063 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 RFXAPO00287 272 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 LDB2O43679 373 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 XYLBO75191 536 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 GBP2P32456 591 aaPredicted RBP18.58■□□□□ 0.57
USP39-201ENST00000323701 NRIP1P48552 1158 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 ARSDP51689 593 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 NAB1Q13506 487 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 RFTN1Q14699 578 aaPredicted RBP18.58■□□□□ 0.57
USP39-201ENST00000323701 ZKSCAN8Q15776 578 aaPredicted RBP18.58■□□□□ 0.57
USP39-201ENST00000323701 MPPE1Q53F39 396 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 FSTL4Q6MZW2 842 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 TIFABQ6ZNK6 161 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 RTL10Q7L3V2 364 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 CMC1Q7Z7K0 106 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 ST13P5Q8NFI4 369 aaPredicted RBP18.58■□□□□ 0.57
USP39-201ENST00000323701 ALKBH8Q96BT7 664 aaKnown RBP18.58■□□□□ 0.57
USP39-201ENST00000323701 IFT43Q96FT9 208 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 LMLNQ96KR4 655 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 CAB39LQ9H9S4 337 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 MRM3Q9HC36 420 aaKnown RBP18.58■□□□□ 0.57
USP39-201ENST00000323701 FGFR1OP2Q9NVK5 253 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 ARL5AQ9Y689 179 aa18.58■□□□□ 0.57
USP39-201ENST00000323701 MROH6A6NGR9 719 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 AURKAO14965 403 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 ZWINTO95229 277 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 PFKLP17858 780 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 MPP1Q00013 466 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 PDE1CQ14123 709 aaPredicted RBP18.58■□□□□ 0.56
USP39-201ENST00000323701 DLG2Q15700 870 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 PDPK2PQ6A1A2 396 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 ARID3BQ8IVW6 561 aaPredicted RBP18.58■□□□□ 0.56
USP39-201ENST00000323701 NDUFAF2Q8N183 169 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 DCLK2Q8N568 766 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 MAGEB18Q96M61 343 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 SPO11Q9Y5K1 396 aa18.58■□□□□ 0.56
USP39-201ENST00000323701 ANKRD36A6QL64 1941 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 A0A0U1RQS6 177 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 COPEO14579 308 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 AHSGP02765 367 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 HLA-FP30511 346 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 CTSOP43234 321 aaPredicted RBP18.57■□□□□ 0.56
USP39-201ENST00000323701 ZNF77Q15935 545 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 MPP7Q5T2T1 576 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 TSTD2Q5T7W7 516 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 CPLX4Q7Z7G2 160 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 BBS5Q8N3I7 341 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 DCAF4L2Q8NA75 395 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 OR6K2Q8NGY2 324 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 FIBINQ8TAL6 211 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 BLOC1S5Q8TDH9 187 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 PTCD2Q8WV60 388 aaKnown RBP18.57■□□□□ 0.56
USP39-201ENST00000323701 TLE6Q9H808 572 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 SCUBE2Q9NQ36 999 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 ZDHHC7Q9NXF8 308 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 HEATR9A2RTY3 570 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms