RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 TM9SF1O15321 606 aa13.6□□□□□ -0.23
RFFL-201ENST00000315249 CD3EAPO15446 510 aaKnown RBP13.6□□□□□ -0.23
RFFL-201ENST00000315249 TSPAN8P19075 237 aa13.6□□□□□ -0.23
RFFL-201ENST00000315249 TRAF2Q12933 501 aa13.6□□□□□ -0.23
RFFL-201ENST00000315249 LRRC73Q5JTD7 316 aa13.6□□□□□ -0.23
RFFL-201ENST00000315249 OR4L1Q8NH43 312 aa13.6□□□□□ -0.23
RFFL-201ENST00000315249 TRMT61BQ9BVS5 477 aaKnown RBP13.6□□□□□ -0.23
RFFL-201ENST00000315249 PRKAB1Q9Y478 270 aa13.6□□□□□ -0.23
RFFL-201ENST00000315249 RASSF10A6NK89 507 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CTBP1Q13363 440 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 PMF1Q6P1K2 205 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 RHBDF2Q6PJF5 856 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 AGMOQ6ZNB7 445 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 GRASPQ7Z6J2 395 aaPredicted RBP13.59□□□□□ -0.23
RFFL-201ENST00000315249 PLD3Q8IV08 490 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 SH3RF2Q8TEC5 729 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 MAF1Q9H063 256 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 SNX6Q9UNH7 406 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 PCDHA11Q9Y5I1 949 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 PFDN1O60925 122 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CILPO75339 1184 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CCT8P50990 548 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 PARP15Q460N3 678 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 LCLAT1Q6UWP7 414 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 GALNT13Q8IUC8 556 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 TCP10LQ8TDR4 215 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 UBE2E3Q969T4 207 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 PCDH12Q9NPG4 1184 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 RAI2Q9Y5P3 530 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CHADO15335 359 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 RIPK2O43353 540 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 WDR47O94967 919 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 MIIPQ5JXC2 388 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CFAP206Q8IYR0 622 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 LRRC34Q8IZ02 419 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ATG16L2Q8NAA4 619 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 OR7D4Q8NG98 312 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 POF1BQ8WVV4 589 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 NMUR1Q9HB89 426 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CCDC167Q9P0B6 97 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 FGF18O76093 207 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 C22orf31O95567 290 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ADRA1DP25100 572 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 VAC14Q08AM6 782 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ELP6Q0PNE2 266 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ARMCX6Q7L4S7 300 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 PRCCQ92733 491 aaPredicted RBP13.59□□□□□ -0.23
RFFL-201ENST00000315249 INTS7Q9NVH2 962 aaKnown RBP13.59□□□□□ -0.23
RFFL-201ENST00000315249 DOT1LQ8TEK3 1739 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 FFAR2O15552 330 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 WNT3AP56704 352 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 PTPN20Q4JDL3 420 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 RIPOR1Q6ZS17 1223 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 BEND7Q8N7W2 519 aaPredicted RBP13.59□□□□□ -0.23
RFFL-201ENST00000315249 OR52K2Q8NGK3 314 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 SCAMP5Q8TAC9 235 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 SHDQ96IW2 340 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CCT7Q99832 543 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 OSBPL6Q9BZF3 934 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ZSCAN32Q9NX65 697 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ZNF232Q9UNY5 417 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ERVW-1Q9UQF0 538 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 FCF1Q9Y324 198 aaKnown RBP13.59□□□□□ -0.23
RFFL-201ENST00000315249 TNPO3Q9Y5L0 923 aaKnown RBP13.59□□□□□ -0.23
RFFL-201ENST00000315249 IGLV3-22A0A075B6J6 115 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 C16orf96A6NNT2 1141 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ONECUT3O60422 494 aaPredicted RBP13.59□□□□□ -0.23
RFFL-201ENST00000315249 CDK14O94921 469 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 NTRK1P04629 796 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CCDC159P0C7I6 412 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 ALPPL2P10696 532 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CES1P23141 567 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 TERF2Q15554 542 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 STRADAQ7RTN6 431 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 FAM126BQ8IXS8 530 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 RBFAQ8N0V3 343 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 SPATA6LQ8N4H0 392 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 BADQ92934 168 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 CERS2Q96G23 380 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 SLC38A3Q99624 504 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 BLOC1S6Q9UL45 172 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 L1RE1Q9UN81 338 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 NR2E1Q9Y466 385 aa13.59□□□□□ -0.23
RFFL-201ENST00000315249 TRIM13O60858 407 aa13.58□□□□□ -0.23
RFFL-201ENST00000315249 CLK3P49761 638 aaKnown RBP13.58□□□□□ -0.23
RFFL-201ENST00000315249 AGGF1Q8N302 714 aaeCLIP13.58□□□□□ -0.23
RFFL-201ENST00000315249 NKAPQ8N5F7 415 aaKnown RBP13.58□□□□□ -0.23
RFFL-201ENST00000315249 DEFB119Q8N690 84 aa13.58□□□□□ -0.23
RFFL-201ENST00000315249 KREMEN1Q96MU8 473 aa13.58□□□□□ -0.23
RFFL-201ENST00000315249 CIDEBQ9UHD4 219 aa13.58□□□□□ -0.23
RFFL-201ENST00000315249 MYH1P12882 1939 aa13.58□□□□□ -0.23
RFFL-201ENST00000315249 LRRC14BA6NHZ5 514 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 PSMA3P25788 255 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 CDK16Q00536 496 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 CCDC142Q17RM4 750 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 S100A3P33764 101 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 ADRA1BP35368 520 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 TBL3Q12788 808 aaKnown RBP13.58□□□□□ -0.24
RFFL-201ENST00000315249 FGD3Q5JSP0 725 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 RNF44Q7L0R7 432 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms