RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 ZNF304Q9HCX3 659 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 PNO1Q9NRX1 252 aaKnown RBP7.86□□□□□ -1.15
SCN9A-201ENST00000303354 NDUFAF1Q9Y375 327 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 GRM6O15303 877 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 PTPN2P17706 415 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 AASDHQ4L235 1098 aaPredicted RBP7.86□□□□□ -1.15
SCN9A-201ENST00000303354 SPANXN3Q5MJ09 141 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 CCNYL2Q5T2Q4 361 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 MAP4K3Q8IVH8 894 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 PYROXD2Q8N2H3 581 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 SETD6Q8TBK2 473 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 UPF1Q92900 1129 aaKnown RBP eCLIP7.86□□□□□ -1.15
SCN9A-201ENST00000303354 ZNF780BQ9Y6R6 833 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 S100A3P33764 101 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 RPL7AP62424 266 aaKnown RBP7.86□□□□□ -1.15
SCN9A-201ENST00000303354 CARTPTQ16568 116 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 FAM46CQ5VWP2 391 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 GCNT7Q6ZNI0 430 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 CHERPQ8IWX8 916 aaKnown RBP7.86□□□□□ -1.15
SCN9A-201ENST00000303354 MYLK2Q9H1R3 596 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 SPATS2LQ9NUQ6 558 aaKnown RBP7.86□□□□□ -1.15
SCN9A-201ENST00000303354 DNAJC28Q9NX36 388 aa7.86□□□□□ -1.15
SCN9A-201ENST00000303354 C16orf96A6NNT2 1141 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 NCAM2O15394 837 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 CD3EAPO15446 510 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ITGB5P18084 799 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PGAM1P18669 254 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PAICSP22234 425 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 OAZ1P54368 228 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 HYIQ5T013 277 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 KLHL24Q6TFL4 600 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 CASP12Q6UXS9 341 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 C4orf22Q6V702 233 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 FAM126BQ8IXS8 530 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 CADM2Q8N3J6 435 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MAGEC3Q8TD91 643 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 RNFT2Q96EX2 444 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 SPRTNQ9H040 489 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PCDHA3Q9Y5H8 950 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MCIDASD6RGH6 385 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 CXCR2P25025 360 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ACSM2AQ08AH3 577 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ITGB3BPQ13352 177 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 C16orf72Q14CZ0 275 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ACSM2BQ68CK6 577 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ZNF57Q68EA5 555 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 TRAF7Q6Q0C0 670 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MCEMP1Q8IX19 187 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ZMAT2Q96NC0 199 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ERGIC2Q96RQ1 377 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 IL12RB2Q99665 862 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 CNPPD1Q9BV87 410 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 EFCAB1Q9HAE3 211 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 KBTBD4Q9NVX7 518 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 SOWAHBA6NEL2 793 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PIK3CDO00329 1044 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 TOP3BO95985 862 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 FAM153BP0C7A2 387 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MAPTP10636 758 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 HNRNPLP14866 589 aaKnown RBP eCLIP7.85□□□□□ -1.155e-7■■□□□ 13.8
SCN9A-201ENST00000303354 ITGAXP20702 1163 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 FAM153CQ494X1 144 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 DEF8Q6ZN54 512 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 KREMEN2Q8NCW0 462 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 RDH11Q8TC12 318 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 HBEGFQ99075 208 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 BLOC1S4Q9NUP1 217 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 GIT1Q9Y2X7 761 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 BCL9O00512 1426 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 FAM155BO75949 473 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 LSP1P33241 339 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 RYKP34925 604 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MC1RQ01726 317 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 NTRK3Q16288 839 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PHYKPLQ8IUZ5 450 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 LMX1AQ8TE12 382 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 KLHL32Q96NJ5 620 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PRDM12Q9H4Q4 367 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ADAM28Q9UKQ2 775 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 CFHP08603 1231 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 THRAP10827 490 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PABPC1P11940 636 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 STX5Q13190 355 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 WLSQ5T9L3 541 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 C1orf186Q6ZWK4 172 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PRCCQ92733 491 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MRPS7Q9Y2R9 242 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 A8MUI8 341 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 KHNYNO15037 678 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 DCLK1O15075 740 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MTX2O75431 263 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ERN1O75460 977 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 PIGNO95427 931 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 ZBTB11O95625 1053 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 GLI1P08151 1106 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MSX2P35548 267 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 CSTF3Q12996 717 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 SLC26A11Q86WA9 606 aa7.85□□□□□ -1.15
SCN9A-201ENST00000303354 MMAAQ8IVH4 418 aaKnown RBP7.85□□□□□ -1.15
SCN9A-201ENST00000303354 RIPOR3Q96MK2 946 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms