RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ARIH1Q9Y4X5 557 aaPredicted RBP12.89□□□□□ -0.35
SS18-202ENST00000269138 FANCMQ8IYD8 2048 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 GPR179Q6PRD1 2367 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 F5H423 210 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 TRAFD1O14545 582 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 ZNF185O15231 689 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SPINT1O43278 529 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 PLRG1O43660 514 aaKnown RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 PRKCGP05129 697 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 MMP2P08253 660 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 ADRB3P13945 408 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 MSNP26038 577 aaKnown RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 CD68P34810 354 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 DHPSP49366 369 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 NEK3P51956 506 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 GRM3Q14832 879 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 FBXL19Q6PCT2 694 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 CDKL3Q8IVW4 592 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 ZNF567Q8N184 647 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 PBKQ96KB5 322 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 TEKT5Q96M29 485 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 ZNF641Q96N77 438 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 OSBPL9Q96SU4 736 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 GLOD4Q9HC38 313 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 DKK3Q9UBP4 350 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 GGT7Q9UJ14 662 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SNX12Q9UMY4 172 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 ITM2BQ9Y287 266 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SDK1Q7Z5N4 2213 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 TSPAN11A1L157 253 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 BCLAF3A2AJT9 711 aaKnown RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 PROB1E7EW31 1015 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 KCNN4O15554 427 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SLC7A4O43246 635 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 LIASO43766 372 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 RHOBTB1O94844 696 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SERPINA4P29622 427 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 CD86P42081 329 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 MAPK8P45983 427 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 PPP2CBP62714 309 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 PPP2CAP67775 309 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SKOR1P84550 965 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SEMG2Q02383 582 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SNX1Q13596 522 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 ELF2Q15723 593 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 LONRF2Q1L5Z9 754 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 TTC7BQ86TV6 843 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 PRPF39Q86UA1 669 aaKnown RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 C11orf74Q86VG3 221 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 RASGEF1CQ8N431 466 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 OR2T34Q8NGX1 318 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 SPATA22Q8NHS9 363 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 ECHDC3Q96DC8 303 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 HSPA12BQ96MM6 686 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 KLHL8Q9P2G9 620 aaPredicted RBP12.88□□□□□ -0.35
SS18-202ENST00000269138 RAB23Q9ULC3 237 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 RAI2Q9Y5P3 530 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 FADS3Q9Y5Q0 445 aa12.88□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3DA0A087WVF3 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3IA0A087WXS9 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3EA0A087X179 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3KA0A087X1G2 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3FA6NER0 549 aaPredicted RBP12.87□□□□□ -0.35
SS18-202ENST00000269138 LRRC72A6NJI9 287 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 METTL12A8MUP2 240 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 C10orf142B7Z368 130 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3LB9A6J9 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 MTSS1O43312 755 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 HTRA2O43464 458 aaPredicted RBP12.87□□□□□ -0.35
SS18-202ENST00000269138 FSBPO95073 299 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 LMNAP02545 664 aaKnown RBP12.87□□□□□ -0.35
SS18-202ENST00000269138 PDHA1P08559 390 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3HP0C7X1 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 NFKB1P19838 968 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 MAOBP27338 520 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 PTPRRQ15256 657 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 RALGPS1Q5JS13 557 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 KIAA0895LQ68EN5 471 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3GQ6DHY5 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3CQ6IPX1 549 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 PID1Q7Z2X4 250 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 TBC1D3Q8IZP1 549 aaPredicted RBP12.87□□□□□ -0.35
SS18-202ENST00000269138 FAM71DQ8N9W8 422 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 CADM4Q8NFZ8 388 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 HCAR2Q8TDS4 363 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 PDCD6IPQ8WUM4 868 aaKnown RBP12.87□□□□□ -0.35
SS18-202ENST00000269138 NKD2Q969F2 451 aaPredicted RBP12.87□□□□□ -0.35
SS18-202ENST00000269138 IMP4Q96G21 291 aaKnown RBP12.87□□□□□ -0.35
SS18-202ENST00000269138 SMIM14Q96QK8 99 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 RBM15Q96T37 977 aaKnown RBP eCLIP12.87□□□□□ -0.35
SS18-202ENST00000269138 TMEM121Q9BTD3 319 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 SLC25A51Q9H1U9 297 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 SEMA4AQ9H3S1 761 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 CHKBQ9Y259 395 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 SLCO1B1Q9Y6L6 691 aa12.87□□□□□ -0.35
SS18-202ENST00000269138 PLXND1Q9Y4D7 1925 aa12.86□□□□□ -0.35
SS18-202ENST00000269138 VPS13AQ96RL7 3174 aa12.86□□□□□ -0.35
SS18-202ENST00000269138 UPK3BL1B0FP48 263 aa12.86□□□□□ -0.35
SS18-202ENST00000269138 UPK3BL2E5RIL1 263 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms