RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 KDM1BQ8NB78 822 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 LRCH3Q96II8 777 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 NR1H4Q96RI1 486 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 DDX18Q9NVP1 670 aaKnown RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 OSER1Q9NX31 292 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 PLXNB2O15031 1838 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 CELF2O95319 508 aaKnown RBP21.5■■□□□ 1.03
TRIM28-201ENST00000253024 BIRC2Q13490 618 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 ZNF423Q2M1K9 1284 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 OCEL1Q9H607 264 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 MARCH4Q9P2E8 410 aaPredicted RBP21.5■■□□□ 1.03
TRIM28-201ENST00000253024 STK39Q9UEW8 545 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 IPO11Q9UI26 975 aaKnown RBP21.5■■□□□ 1.03
TRIM28-201ENST00000253024 AP4B1Q9Y6B7 739 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 hCG_2014768A0A024R1R8 64 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 TMEM114B3SHH9 223 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 NCAM2O15394 837 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 GPC4O75487 556 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 CABYRO75952 493 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 CHRNA1P02708 482 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 LRPAP1P30533 357 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 CD151P48509 253 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 CSE1LP55060 971 aaKnown RBP21.5■■□□□ 1.03
TRIM28-201ENST00000253024 CDK18Q07002 472 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 XKR4Q5GH76 650 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 CWF19L1Q69YN2 538 aaKnown RBP21.5■■□□□ 1.03
TRIM28-201ENST00000253024 GRIN3AQ8TCU5 1115 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 PPWD1Q96BP3 646 aaKnown RBP21.5■■□□□ 1.03
TRIM28-201ENST00000253024 MRGPRX2Q96LB1 330 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 KIFC1Q9BW19 673 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 NCKIPSDQ9NZQ3 722 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 SLC4A7Q9Y6M7 1214 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 V9GYQ6 96 aa21.5■■□□□ 1.03
TRIM28-201ENST00000253024 RNASEH2AO75792 299 aaKnown RBP21.49■■□□□ 1.03
TRIM28-201ENST00000253024 CES1P23141 567 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 AXLP30530 894 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 IHHQ14623 411 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 SLC39A12Q504Y0 691 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 BLOC1S5Q8TDH9 187 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 GPR78Q96P69 363 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 SPATA16Q9BXB7 569 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 PIF1Q9H611 641 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 NCF1BA6NI72 391 aaPredicted RBP21.49■■□□□ 1.03
TRIM28-201ENST00000253024 NCF1CA8MVU1 366 aaPredicted RBP21.49■■□□□ 1.03
TRIM28-201ENST00000253024 CRTAMO95727 393 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 NCF1P14598 390 aaPredicted RBP21.49■■□□□ 1.03
TRIM28-201ENST00000253024 UGT1A6P19224 532 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 CCR1P32246 355 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 ARCN1P48444 511 aaKnown RBP21.49■■□□□ 1.03
TRIM28-201ENST00000253024 YBX1P67809 324 aaKnown RBP21.49■■□□□ 1.03
TRIM28-201ENST00000253024 GSTA3Q16772 222 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 ALFQ53S48 1182 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 OVOS1Q6IE37 1185 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 SCIMPQ6UWF3 145 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 USP50Q70EL3 339 aaPredicted RBP21.49■■□□□ 1.03
TRIM28-201ENST00000253024 LIMS2Q7Z4I7 341 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 GALNT15Q8N3T1 639 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 HDAC10Q969S8 669 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 ESAMQ96AP7 390 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 KCNA7Q96RP8 456 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 SNX13Q9Y5W8 968 aa21.49■■□□□ 1.03
TRIM28-201ENST00000253024 TCAF2A6NFQ2 919 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 SDHDO14521 159 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 MYL4P12829 197 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 CHRM3P20309 590 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 PSMD5Q16401 504 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 HABP4Q5JVS0 413 aaKnown RBP21.48■■□□□ 1.03
TRIM28-201ENST00000253024 DCLRE1AQ6PJP8 1040 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 C16orf89Q6UX73 402 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 LRTOMTQ8WZ04 291 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 SLC9A7Q96T83 725 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 MRPL46Q9H2W6 279 aaKnown RBP21.48■■□□□ 1.03
TRIM28-201ENST00000253024 FAM124BQ9H5Z6 455 aaPredicted RBP21.48■■□□□ 1.03
TRIM28-201ENST00000253024 TCAF1Q9Y4C2 921 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 SULT2A1Q06520 285 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 SCAPQ12770 1279 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 EFEMP1Q12805 493 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 CBLBQ13191 982 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 FAM83EQ2M2I3 478 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 PIGGQ5H8A4 983 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 JADE3Q92613 823 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 EXOC2Q96KP1 924 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 FAM96AQ9H5X1 160 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 ZBTB26Q9HCK0 441 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 DMAP1Q9NPF5 467 aaPredicted RBP21.48■■□□□ 1.03
TRIM28-201ENST00000253024 CDH9Q9ULB4 789 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 PSMD13Q9UNM6 376 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 AAR2Q9Y312 384 aaKnown RBP21.48■■□□□ 1.03
TRIM28-201ENST00000253024 HOXD8P13378 290 aaPredicted RBP21.48■■□□□ 1.03
TRIM28-201ENST00000253024 ME2P23368 584 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 UPP1Q16831 310 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 RAB41Q5JT25 222 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 PSMG2Q969U7 264 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 EME1Q96AY2 570 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 SERPINI1Q99574 410 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 EFCAB1Q9HAE3 211 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 HS3ST4Q9Y661 456 aa21.48■■□□□ 1.03
TRIM28-201ENST00000253024 MAGEB16A2A368 324 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 FAM149AA5PLN7 773 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 F9P00740 461 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms