RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 ZSWIM9Q86XI8 627 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 RAB7BQ96AH8 199 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 CENPTQ96BT3 561 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 LENG8Q96PV6 779 aaPredicted RBP22.4■■□□□ 1.18
VTI1B-201ENST00000216456 CATSPERBQ9H7T0 1116 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 MFHAS1Q9Y4C4 1052 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 AK5Q9Y6K8 562 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 ZSCAN5CA6NGD5 496 aaPredicted RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 SCAMP1O15126 338 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 BUB1BO60566 1050 aaPredicted RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 NME1P15531 152 aaKnown RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 ITPKBP27987 946 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 RABIFP47224 123 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 PAPOLAP51003 745 aaKnown RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 YBEYP58557 167 aaPredicted RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 C1orf61Q13536 156 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 TCEA2Q15560 299 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 DEFB133Q30KQ1 61 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 PARP15Q460N3 678 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 INO80DQ53TQ3 878 aaPredicted RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 PARGQ86W56 976 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 NPWQ8N729 165 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 NSMCE3Q96MG7 304 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 BPIFA3Q9BQP9 254 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 OSBPL1AQ9BXW6 950 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 UBA2Q9UBT2 640 aaPredicted RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 IPO11Q9UI26 975 aaKnown RBP22.39■■□□□ 1.17
VTI1B-201ENST00000216456 CLCA2Q9UQC9 943 aa22.39■■□□□ 1.17
VTI1B-201ENST00000216456 TMEM191CA6NGB0 347 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 EEF2KO00418 725 aaKnown RBP22.38■■□□□ 1.17
VTI1B-201ENST00000216456 FTLP02792 175 aaPredicted RBP22.38■■□□□ 1.17
VTI1B-201ENST00000216456 CKMT1AP12532 417 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 TCF4P15884 667 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 JUNDP17535 347 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 MIPP30301 263 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 ILKQ13418 452 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 KLHL40Q2TBA0 621 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 ARHGAP12Q8IWW6 846 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 TP53I13Q8NBR0 393 aaPredicted RBP22.38■■□□□ 1.17
VTI1B-201ENST00000216456 LMX1AQ8TE12 382 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 RFFLQ8WZ73 363 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 NXPE2Q96DL1 559 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 PARVAQ9NVD7 372 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 NLGN3Q9NZ94 848 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 MYO1AQ9UBC5 1043 aa22.38■■□□□ 1.17
VTI1B-201ENST00000216456 A0A1B0GTH6 734 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 PRAMEF11O60813 436 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 GCATO75600 419 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 MT-CO3P00414 261 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 CELA2BP08218 269 aaPredicted RBP22.37■■□□□ 1.17
VTI1B-201ENST00000216456 CCDC172P0C7W6 258 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 ZNF165P49910 485 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 HNRNPKP61978 463 aaKnown RBP eCLIP22.37■■□□□ 1.17
VTI1B-201ENST00000216456 IQCB1Q15051 598 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 CRTC1Q6UUV9 634 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 DCP2Q8IU60 420 aaKnown RBP22.37■■□□□ 1.17
VTI1B-201ENST00000216456 CAMK1DQ8IU85 385 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 DCBLD1Q8N8Z6 715 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 CXorf40AQ8TE69 158 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 IFT43Q96FT9 208 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 NCAPGQ9BPX3 1015 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 FUCA2Q9BTY2 467 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 NAT10Q9H0A0 1025 aaKnown RBP22.37■■□□□ 1.17
VTI1B-201ENST00000216456 CNOT8Q9UFF9 292 aaKnown RBP22.37■■□□□ 1.17
VTI1B-201ENST00000216456 MYO6Q9UM54 1294 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 BPTFQ12830 3046 aa22.37■■□□□ 1.17
VTI1B-201ENST00000216456 TTC24A2A3L6 582 aaPredicted RBP22.36■■□□□ 1.17
VTI1B-201ENST00000216456 FGF10O15520 208 aaPredicted RBP22.36■■□□□ 1.17
VTI1B-201ENST00000216456 OPA1O60313 960 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 TM7SF2O76062 418 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 CDK4P11802 303 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 ERCC2P18074 760 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 AIF1P55008 147 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 IRF4Q15306 451 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 CDKN3Q16667 212 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 PPP6R3Q5H9R7 873 aaPredicted RBP22.36■■□□□ 1.17
VTI1B-201ENST00000216456 ERMARDQ5T6L9 678 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 KCTD16Q68DU8 428 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 RFX8Q6ZV50 586 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 TSEN2Q8NCE0 465 aaKnown RBP22.36■■□□□ 1.17
VTI1B-201ENST00000216456 CASKIN2Q8WXE0 1202 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 ASB12Q8WXK4 309 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 ZNF653Q96CK0 615 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 VCPIP1Q96JH7 1222 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 PCDH12Q9NPG4 1184 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 AIPL1Q9NZN9 384 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 DKK3Q9UBP4 350 aa22.36■■□□□ 1.17
VTI1B-201ENST00000216456 SMTNL1A8MU46 457 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 MUSKO15146 869 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 AQP9O43315 295 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 BRINP1O60477 761 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 IL1R2P27930 398 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 RAD51Q06609 339 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 KLHL30Q0D2K2 578 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 RTP5Q14D33 572 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 HS1BP3Q53T59 392 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 GUSBP11Q6P575 273 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 DENND6BQ8NEG7 585 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 FAM174AQ8TBP5 190 aa22.35■■□□□ 1.17
VTI1B-201ENST00000216456 BBC3Q96PG8 261 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms