RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	DFFA	O00273	331 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	SLC22A2	O15244	555 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	CACNG3	O60359	315 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	SLC1A2	P43004	574 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	RPL5	P46777	297 aa	Known RBP	13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	CXCR3	P49682	368 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	PCID2	Q5JVF3	399 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	PM20D1	Q6GTS8	502 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	RWDD4	Q6NW29	188 aa	Known RBP	13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	DPP9	Q86TI2	863 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	SETD3	Q86TU7	594 aa	Predicted RBP	13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	ADCY4	Q8NFM4	1077 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	MAEL	Q96JY0	434 aa	Known RBP	13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	PRPF18	Q99633	342 aa	Known RBP	13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	SIK2	Q9H0K1	926 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	EPB41L1	Q9H4G0	881 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	TLL2	Q9Y6L7	1015 aa		13.99	□□□□□ -0.17
PHGDH-233	ENST00000642021	CAPNS1	P04632	268 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	STMN1	P16949	149 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	LRPAP1	P30533	357 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	ADSL	P30566	484 aa	Predicted RBP	13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	PRPSAP1	Q14558	356 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	HERC3	Q15034	1050 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	13.98	□□□□□ -0.17	6e-6	■■■■□ 21.1
PHGDH-233	ENST00000642021	ZNF789	Q5FWF6	425 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	TRIM67	Q6ZTA4	783 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	TAC4	Q86UU9	113 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	CNTN4	Q8IWV2	1026 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	MPP4	Q96JB8	637 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	MAML3	Q96JK9	1138 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	GRIP2	Q9C0E4	1043 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	RMI1	Q9H9A7	625 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	PCDHGA7	Q9Y5G6	932 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021		E7ENX8	843 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	SLCO1B7	G3V0H7	640 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	AXL	P30530	894 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	HK2	P52789	917 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	PRKAA2	P54646	552 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	LAMB3	Q13751	1172 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	R3HDM1	Q15032	1099 aa	Known RBP	13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	PPP1R3A	Q16821	1122 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	MYLK3	Q32MK0	819 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	C3orf58	Q8NDZ4	430 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	ZFP28	Q8NHY6	868 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	DNAJC1	Q96KC8	554 aa	Known RBP	13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	PPP1R10	Q96QC0	940 aa	Known RBP	13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	TBL1Y	Q9BQ87	522 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	FICD	Q9BVA6	458 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	DNAI2	Q9GZS0	605 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	SEMA6A	Q9H2E6	1030 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	CYP4F12	Q9HCS2	524 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	CHST12	Q9NRB3	414 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	NDFIP2	Q9NV92	336 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	ADA2	Q9NZK5	511 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	NEU3	Q9UQ49	428 aa		13.98	□□□□□ -0.17
PHGDH-233	ENST00000642021	C7orf72	A4D263	438 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	COL6A2	P12110	1019 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	ZNF26	P17031	533 aa	Predicted RBP	13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	CHRNA4	P43681	627 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	C1QTNF8	P60827	252 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	CDC42EP1	Q00587	391 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	PTK2B	Q14289	1009 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	RFTN1	Q14699	578 aa	Predicted RBP	13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	NRF1	Q16656	503 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	RBM20	Q5T481	1227 aa	Known RBP	13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	ARHGAP12	Q8IWW6	846 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	PELI3	Q8N2H9	469 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	SPPL2B	Q8TCT7	592 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	ELMO2	Q96JJ3	720 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	MRPL46	Q9H2W6	279 aa	Known RBP	13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	POMK	Q9H5K3	350 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	CHCHD3	Q9NX63	227 aa	Known RBP	13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	NSMCE4A	Q9NXX6	385 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	GTSE1	Q9NYZ3	720 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	F2	P00734	622 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	ADAM17	P78536	824 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	SULT2A1	Q06520	285 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	NOMO2	Q5JPE7	1267 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	KLHDC10	Q6PID8	442 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	LINC00523	Q86TU6	105 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	RNF135	Q8IUD6	432 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	TMEM126B	Q8IUX1	230 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	KLHDC8B	Q8IXV7	354 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	CEP70	Q8NHQ1	597 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	SGIP1	Q9BQI5	828 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	TINF2	Q9BSI4	451 aa		13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	RBM38	Q9H0Z9	239 aa	Known RBP	13.97	□□□□□ -0.17
PHGDH-233	ENST00000642021	UNCX	A6NJT0	531 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	FBP2	O00757	339 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	PMPCB	O75439	489 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	CSPG5	O95196	566 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	CLCNKB	P51801	687 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	PLK1	P53350	603 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	PSME3	P61289	254 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	RALGDS	Q12967	914 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	CSHL1	Q14406	222 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.96	□□□□□ -0.17	2e-6	■■■□□ 14.6
PHGDH-233	ENST00000642021	MGAT5B	Q3V5L5	792 aa		13.96	□□□□□ -0.17
PHGDH-233	ENST00000642021	ZNF470	Q6ECI4	717 aa		13.96	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms