RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CAPSQ13938 189 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 TIGD6Q17RP2 521 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 FAM69BQ5VUD6 431 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 NCAPH2Q6IBW4 605 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 TYW3Q6IPR3 259 aaKnown RBP4.32□□□□□ -1.72
CD44-239ENST00000639002 C1orf228Q6PIY5 440 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 RHBDF2Q6PJF5 856 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 GALNT15Q8N3T1 639 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 NCSTNQ92542 709 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 GOLGA1Q92805 767 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 RNFT2Q96EX2 444 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 NODALQ96S42 347 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 CHODLQ9H9P2 273 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 PLCB1Q9NQ66 1216 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 TMEM51Q9NW97 253 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 CD207Q9UJ71 328 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 PRAC2D3DTV9 90 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 F5H423 210 aaPredicted RBP4.31□□□□□ -1.72
CD44-239ENST00000639002 SERPINC1P01008 464 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 IL1AP01583 271 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 SSTR2P30874 369 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 FMO4P31512 558 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 HNF1BP35680 557 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 CXCR3P49682 368 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 DDR1Q08345 913 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 SNTA1Q13424 505 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 DHX34Q14147 1143 aaKnown RBP4.31□□□□□ -1.72
CD44-239ENST00000639002 XKR9Q5GH70 373 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 FAM83BQ5T0W9 1011 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 SMIM29Q86T20 159 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 AADATQ8N5Z0 425 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 RFWD2Q8NHY2 731 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 TBC1D22AQ8WUA7 517 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 SPRY4Q9C004 299 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 DAAM1Q9Y4D1 1078 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 KIF26BQ2KJY2 2108 aa4.31□□□□□ -1.72
CD44-239ENST00000639002 MAGEA13PA6NCF6 341 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 NTN3O00634 580 aaPredicted RBP4.3□□□□□ -1.72
CD44-239ENST00000639002 SLC25A17O43808 307 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 DHX16O60231 1041 aaKnown RBP4.3□□□□□ -1.72
CD44-239ENST00000639002 VNN2O95498 520 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 ADAP00813 363 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 BRWD1-AS2P59051 145 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 ARL16Q0P5N6 197 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 ST3GAL1Q11201 340 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 CBWD5Q5RIA9 395 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 CCDC129Q6ZRS4 1044 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 MON1AQ86VX9 555 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 SORCS1Q8WY21 1168 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 TRIB2Q92519 343 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 SDCCAG3Q96C92 435 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 BICD1Q96G01 975 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 IL17FQ96PD4 163 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 YME1L1Q96TA2 773 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 MALT1Q9UDY8 824 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 NFS1Q9Y697 457 aa4.3□□□□□ -1.72
CD44-239ENST00000639002 SAA2-SAA4A0A096LPE2 208 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 STX16-NPEPL1H3BU86 382 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 STX16O14662 325 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 CH25HO95992 272 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 SP1P08047 785 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 ADD2P35612 726 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 RPL3P39023 403 aaKnown RBP4.29□□□□□ -1.72
CD44-239ENST00000639002 MCM2P49736 904 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 ARSFP54793 590 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 PLEKHO1Q53GL0 409 aaPredicted RBP4.29□□□□□ -1.72
CD44-239ENST00000639002 CCDC174Q6PII3 467 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 MB21D2Q8IYB1 491 aaPredicted RBP4.29□□□□□ -1.72
CD44-239ENST00000639002 SPICE1Q8N0Z3 855 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 RILPL2Q969X0 211 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 RBM17Q96I25 401 aaKnown RBP4.29□□□□□ -1.72
CD44-239ENST00000639002 CLSTN3Q9BQT9 956 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 PCGF6Q9BYE7 350 aa4.29□□□□□ -1.72
CD44-239ENST00000639002 ADGRF5Q8IZF2 1346 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 CPED1A4D0V7 1026 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 B9A039 149 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 PLIN1O60240 522 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 SOCS5O75159 536 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 IGHV4-30-4P0DP06 118 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 MYF6P23409 242 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 SLC18A3Q16572 532 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 MYLK4Q86YV6 388 aaPredicted RBP4.28□□□□□ -1.72
CD44-239ENST00000639002 DENND6AQ8IWF6 608 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 CCDC146Q8IYE0 955 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 ZMIZ2Q8NF64 920 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 ARRDC2Q8TBH0 407 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 SAYSD1Q9NPB0 183 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 TCF7L2Q9NQB0 619 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 OR6C3Q9NZP0 311 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 TAGLN3Q9UI15 199 aa4.28□□□□□ -1.72
CD44-239ENST00000639002 HBP1O60381 514 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 HDAC1Q13547 482 aaPredicted RBP4.27□□□□□ -1.73
CD44-239ENST00000639002 UBE4AQ14139 1066 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 TRIM14Q14142 442 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 POSTNQ15063 836 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 DCAF6Q58WW2 860 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 NAGSQ8N159 534 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 POC1AQ8NBT0 407 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 VPS37AQ8NEZ2 397 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 TMEM170AQ8WVE7 144 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms