RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 LHX3Q9UBR4 397 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 C16orf96A6NNT2 1141 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 KRIT1O00522 736 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 PRAMEF11O60813 436 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 H2AFZP0C0S5 128 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 RXRGP48443 463 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 STAT4Q14765 748 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 PPP6R3Q5H9R7 873 aaPredicted RBP19.52■□□□□ 0.71
CLN3-260ENST00000637578 H2AFVQ71UI9 128 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 RYBPQ8N488 228 aaPredicted RBP19.52■□□□□ 0.71
CLN3-260ENST00000637578 SETD7Q8WTS6 366 aaKnown RBP19.52■□□□□ 0.71
CLN3-260ENST00000637578 RAB7BQ96AH8 199 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 CELF6Q96J87 481 aaKnown RBP19.52■□□□□ 0.71
CLN3-260ENST00000637578 NUP85Q9BW27 656 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 CPEB1Q9BZB8 566 aaKnown RBP19.52■□□□□ 0.71
CLN3-260ENST00000637578 GDF3Q9NR23 364 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 IP6K2Q9UHH9 426 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 BTBD3Q9Y2F9 522 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 PCDHB9Q9Y5E1 797 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 EPN1Q9Y6I3 576 aaPredicted RBP19.52■□□□□ 0.71
CLN3-260ENST00000637578 ACACBO00763 2458 aa19.52■□□□□ 0.71
CLN3-260ENST00000637578 TMEM131Q92545 1883 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 DOCK9Q9BZ29 2069 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 ARHGAP42A6NI28 874 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 J3KR12 359 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 PCDH8O95206 1070 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 NDUFA10O95299 355 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 TRIM16O95361 564 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 LCA5LO95447 670 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 PAPOLAP51003 745 aaKnown RBP19.51■□□□□ 0.71
CLN3-260ENST00000637578 RHOAP61586 193 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 FOXC1Q12948 553 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 PRAMEF14Q5SWL7 426 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 SEL1L3Q68CR1 1132 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 KIAA1161Q6NSJ0 714 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 POLNQ7Z5Q5 900 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 ZSCAN30Q86W11 494 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 NPWQ8N729 165 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 TEKT4Q8WW24 435 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 FEM1CQ96JP0 617 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 PDLIM2Q96JY6 352 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 ZWILCHQ9H900 591 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 UBA2Q9UBT2 640 aaPredicted RBP19.51■□□□□ 0.71
CLN3-260ENST00000637578 ANAPC7Q9UJX3 599 aa19.51■□□□□ 0.71
CLN3-260ENST00000637578 SLC31A1O15431 190 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 SPINT1O43278 529 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 DAPK3O43293 454 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 TSPAN6O43657 245 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 MAGEC1O60732 1142 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 TOP3BO95985 862 aaKnown RBP19.5■□□□□ 0.71
CLN3-260ENST00000637578 UGT2B4P06133 528 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 TMEM253P0C7T8 217 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 RARAP10276 462 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 PRLRP16471 622 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 ABL2P42684 1182 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 GRK6P43250 576 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 RPS21P63220 83 aaKnown RBP19.5■□□□□ 0.71
CLN3-260ENST00000637578 SLC25A11Q02978 314 aaKnown RBP19.5■□□□□ 0.71
CLN3-260ENST00000637578 RAD51Q06609 339 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 GDPD4Q6W3E5 623 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 LZTR1Q8N653 840 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 NETO2Q8NC67 525 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 RHBDD1Q8TEB9 315 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 SAP25Q8TEE9 199 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 CTNNBL1Q8WYA6 563 aaPredicted RBP19.5■□□□□ 0.71
CLN3-260ENST00000637578 BTBD6Q96KE9 485 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 CDC6Q99741 560 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 DKK3Q9UBP4 350 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 CA5BQ9Y2D0 317 aa19.5■□□□□ 0.71
CLN3-260ENST00000637578 AREL1O15033 823 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 YKT6O15498 198 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 IGSF6O95976 241 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 HNRNPA2B1P22626 353 aaKnown RBP19.49■□□□□ 0.71
CLN3-260ENST00000637578 FGL2Q14314 439 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 SPA17Q15506 151 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 TXNRD3NBQ6F5E7 133 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 LRRC8AQ8IWT6 810 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 HCAR2Q8TDS4 363 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 KLK6Q92876 244 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 KLHL32Q96NJ5 620 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 C1QTNF2Q9BXJ5 285 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 SLC17A9Q9BYT1 436 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 HS3ST3A1Q9Y663 406 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 FAM221BA6H8Z2 402 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 MYO1FO00160 1098 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 DKK1O94907 266 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 CSNK1DP48730 415 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 ARRB1P49407 418 aaPredicted RBP19.49■□□□□ 0.71
CLN3-260ENST00000637578 SMTNL2Q2TAL5 461 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 RAB44Q7Z6P3 723 aaPredicted RBP19.49■□□□□ 0.71
CLN3-260ENST00000637578 ABI3BPQ7Z7G0 1075 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 OXR1Q8N573 874 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 FAM174AQ8TBP5 190 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 FAM71BQ8TC56 605 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 ASB12Q8WXK4 309 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 TSC1Q92574 1164 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 KLHDC7BQ96G42 594 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 SCNM1Q9BWG6 230 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-260ENST00000637578 TOR4AQ9NXH8 423 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms