RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 CYP4F11Q9HBI6 524 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 EIF2B3Q9NR50 452 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 CLIC5Q9NZA1 410 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 SENP1Q9P0U3 644 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 TANC1Q9C0D5 1861 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 MTSS1O43312 755 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 GJB5O95377 273 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 PENKP01210 267 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 SLC2A3P11169 496 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 MLNP12872 115 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 ADRA1DP25100 572 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 HOXC13P31276 330 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 CFAP52Q8N1V2 620 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 DPF3Q92784 378 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 PPP1R14BQ96C90 147 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 TMEM169Q96HH4 297 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 ATXN3LQ9H3M9 355 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 TRHDEQ9UKU6 1024 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 GSC2O15499 205 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 PRPF4O43172 522 aaKnown RBP eCLIP11.66□□□□□ -0.545e-7■■■■■ 30.9
CLN6-217ENST00000636964 KDM1AO60341 852 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 ERVK-10P10266 1014 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 CCNCP24863 283 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 ERFP50548 548 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 COG7P83436 770 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 IL9RQ01113 521 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 TRIP4Q15650 581 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 SEPT7Q16181 437 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 ITPRIPL1Q6GPH6 555 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 OTOAQ7RTW8 1153 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 ATP6V0D2Q8N8Y2 350 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 ZBTB8BQ8NAP8 495 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 TTC16Q8NEE8 873 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 RPRD1AQ96P16 312 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 FCRL3Q96P31 734 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 KLHL5Q96PQ7 755 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 C2orf49Q9BVC5 232 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 FAM192AQ9GZU8 254 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 RBM22Q9NW64 420 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLN6-217ENST00000636964 IPO11Q9UI26 975 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 SMG5Q9UPR3 1016 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 TTC24A2A3L6 582 aaPredicted RBP11.65□□□□□ -0.54
CLN6-217ENST00000636964 J3KR12 359 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 SCAMP3O14828 347 aaKnown RBP11.65□□□□□ -0.54
CLN6-217ENST00000636964 RNASEH1O60930 286 aaKnown RBP11.65□□□□□ -0.54
CLN6-217ENST00000636964 MTRF1O75570 445 aaKnown RBP11.65□□□□□ -0.54
CLN6-217ENST00000636964 PSMD7P51665 324 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 TTC39BQ5VTQ0 682 aaPredicted RBP11.65□□□□□ -0.54
CLN6-217ENST00000636964 KCTD11Q693B1 232 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 CHSY1Q86X52 802 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 CHCHD4Q8N4Q1 142 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 IPMKQ8NFU5 416 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 RFWD2Q8NHY2 731 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 HMCESQ96FZ2 354 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 BTN2A3PQ96KV6 586 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 C1orf74Q96LT6 269 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 GBP5Q96PP8 586 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 OXCT2Q9BYC2 517 aaPredicted RBP11.65□□□□□ -0.54
CLN6-217ENST00000636964 SLC13A1Q9BZW2 595 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 MOCS1Q9NZB8 636 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 PSAT1Q9Y617 370 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 FAM159BA6NKW6 160 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 PMPCBO75439 489 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 MAXP61244 160 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 LRP8Q14114 963 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 LZTR1Q8N653 840 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 BANPQ8N9N5 519 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 MFSD3Q96ES6 412 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 ZNF558Q96NG5 402 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 VAT1Q99536 393 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 ZYG11BQ9C0D3 744 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 CHRAC1Q9NRG0 131 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 GKN1Q9NS71 199 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 BFARQ9NZS9 450 aa11.65□□□□□ -0.54
CLN6-217ENST00000636964 RPL26L1Q9UNX3 145 aaKnown RBP11.65□□□□□ -0.54
CLN6-217ENST00000636964 GOLGA8TH3BQL2 631 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 MATN3O15232 486 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 HNRNPRO43390 633 aaKnown RBP11.65□□□□□ -0.55
CLN6-217ENST00000636964 LPXNO60711 386 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 SUPT3HO75486 399 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 HLA-DQB2P05538 268 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 SNRPAP09012 282 aaKnown RBP11.65□□□□□ -0.55
CLN6-217ENST00000636964 HSPA1AP0DMV8 641 aaKnown RBP11.65□□□□□ -0.55
CLN6-217ENST00000636964 HSPA1BP0DMV9 641 aaKnown RBP11.65□□□□□ -0.55
CLN6-217ENST00000636964 RAG1P15918 1043 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 PGAM1P18669 254 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 ENDOUP21128 410 aaKnown RBP11.65□□□□□ -0.55
CLN6-217ENST00000636964 HOXD12P35452 270 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 SMARCB1Q12824 385 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 CBLBQ13191 982 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 CCDC6Q16204 474 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 TAF12Q16514 161 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 LIN52Q52LA3 116 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 NADSYN1Q6IA69 706 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 NLRP9Q7RTR0 991 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 ZNF683Q8IZ20 524 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 ZNF461Q8TAF7 563 aa11.65□□□□□ -0.55
CLN6-217ENST00000636964 ZNF669Q96BR6 464 aaPredicted RBP11.65□□□□□ -0.55
CLN6-217ENST00000636964 PABPC5Q96DU9 382 aaKnown RBP11.65□□□□□ -0.55
CLN6-217ENST00000636964 TSGA13Q96PP4 275 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms