RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CHMP5Q9NZZ3 219 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 PNMA8BQ9ULN7 279 aaPredicted RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 ARID1BQ8NFD5 2236 aaPredicted RBP16.39■□□□□ 0.22
CLN3-246ENST00000636228 H3BM21 787 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 AQP9O43315 295 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 BUB1O43683 1085 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 RAMP2O60895 175 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 C1QL1O75973 258 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 POP4O95707 220 aaKnown RBP16.39■□□□□ 0.21
CLN3-246ENST00000636228 RFC1P35251 1148 aaPredicted RBP16.39■□□□□ 0.21
CLN3-246ENST00000636228 ETFBP38117 255 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 DUSP3P51452 185 aaPredicted RBP16.39■□□□□ 0.21
CLN3-246ENST00000636228 JAM2P57087 298 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 PFN3P60673 137 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 NRG1Q02297 640 aaPredicted RBP16.39■□□□□ 0.21
CLN3-246ENST00000636228 PTP4A2Q12974 167 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 KRT31Q15323 416 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 GDPD4Q6W3E5 623 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 VPS36Q86VN1 386 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 ZNF677Q86XU0 584 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 PLPP6Q8IY26 295 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 CENPIQ92674 756 aaPredicted RBP16.39■□□□□ 0.21
CLN3-246ENST00000636228 DUSP23Q9BVJ7 150 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 MAGEH1Q9H213 219 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 MBNL1Q9NR56 388 aaKnown RBP16.39■□□□□ 0.21
CLN3-246ENST00000636228 HPCAL4Q9UM19 191 aa16.39■□□□□ 0.21
CLN3-246ENST00000636228 KNTC1P50748 2209 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 ASXL3Q9C0F0 2248 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 ATXN7O15265 892 aaPredicted RBP16.38■□□□□ 0.21
CLN3-246ENST00000636228 KDELR3O43731 214 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 GCATO75600 419 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 GSRP00390 522 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 GP1BAP07359 652 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 KRT3P12035 628 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 UNGP13051 313 aaPredicted RBP16.38■□□□□ 0.21
CLN3-246ENST00000636228 PTPN9P43378 593 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 SNRPD1P62314 119 aaKnown RBP16.38■□□□□ 0.21
CLN3-246ENST00000636228 ZCCHC8Q6NZY4 707 aaKnown RBP16.38■□□□□ 0.21
CLN3-246ENST00000636228 WDR59Q6PJI9 974 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 STRADAQ7RTN6 431 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 EFL1Q7Z2Z2 1120 aaKnown RBP16.38■□□□□ 0.21
CLN3-246ENST00000636228 GPR155Q7Z3F1 870 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 RAB7BQ96AH8 199 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 CENPTQ96BT3 561 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 WRAP53Q9BUR4 548 aaKnown RBP16.38■□□□□ 0.21
CLN3-246ENST00000636228 NOL6Q9H6R4 1146 aaKnown RBP16.38■□□□□ 0.21
CLN3-246ENST00000636228 ADAM22Q9P0K1 906 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 BPTFQ12830 3046 aa16.38■□□□□ 0.21
CLN3-246ENST00000636228 A0A1W2PNU3 283 aaPredicted RBP16.37■□□□□ 0.21
CLN3-246ENST00000636228 AREL1O15033 823 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 MUSKO15146 869 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 INSIG1O15503 277 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 TMCC1O94876 653 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 TIMP2P16035 220 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 GPD1P21695 349 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 IGFALSP35858 605 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 ADKP55263 362 aaKnown RBP16.37■□□□□ 0.21
CLN3-246ENST00000636228 TCEA2Q15560 299 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 ISXQ2M1V0 245 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 PRRT3Q5FWE3 981 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 PERM1Q5SV97 790 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 SCYL2Q6P3W7 929 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 ZNF248Q8NDW4 579 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 ENOX1Q8TC92 643 aaKnown RBP16.37■□□□□ 0.21
CLN3-246ENST00000636228 IL12RB2Q99665 862 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 SELENOOQ9BVL4 669 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 POLR1BQ9H9Y6 1135 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 USP29Q9HBJ7 922 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 CPNE5Q9HCH3 593 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 FANCLQ9NW38 375 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 COQ6Q9Y2Z9 468 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 CSNK1G3Q9Y6M4 447 aa16.37■□□□□ 0.21
CLN3-246ENST00000636228 PMS2P1A4D2B8 440 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 CCP110O43303 1012 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 CREB3O43889 395 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 CELA2BP08218 269 aaPredicted RBP16.36■□□□□ 0.21
CLN3-246ENST00000636228 EPHB2P29323 1055 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 STAT1P42224 750 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 NSFP46459 744 aaKnown RBP16.36■□□□□ 0.21
CLN3-246ENST00000636228 LSSP48449 732 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 THOP1P52888 689 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 GEMIN4P57678 1058 aaKnown RBP16.36■□□□□ 0.21
CLN3-246ENST00000636228 PCBP4P57723 403 aaKnown RBP16.36■□□□□ 0.21
CLN3-246ENST00000636228 C19orf57Q0VDD7 668 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 CLEC16AQ2KHT3 1053 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 C3orf38Q5JPI3 329 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 FAXCQ5TGI0 409 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 CDKAL1Q5VV42 579 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 FOXR1Q6PIV2 292 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 NYAP1Q6ZVC0 841 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 SLFN11Q7Z7L1 901 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 CXorf40AQ8TE69 158 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 ASB12Q8WXK4 309 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 HMCESQ96FZ2 354 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 ATXN7L3BQ96GX2 97 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 HIC2Q96JB3 615 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 EXOC2Q96KP1 924 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 PCMTD1Q96MG8 357 aaPredicted RBP16.36■□□□□ 0.21
CLN3-246ENST00000636228 GDAP1L1Q96MZ0 367 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 ZNF578Q96N58 590 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms