RNA–Protein interactions for RNA: ENST00000628078.2

TCF4-262, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-262	ENST00000628078	NLRC4	Q9NPP4	1024 aa		13.71	□□□□□ -0.21
TCF4-262	ENST00000628078	MBNL1	Q9NR56	388 aa	Known RBP	13.71	□□□□□ -0.21
TCF4-262	ENST00000628078	PPARGC1A	Q9UBK2	798 aa	Known RBP	13.71	□□□□□ -0.21
TCF4-262	ENST00000628078	COQ6	Q9Y2Z9	468 aa		13.71	□□□□□ -0.21
TCF4-262	ENST00000628078	PTPRQ	Q9UMZ3	2332 aa		13.71	□□□□□ -0.21
TCF4-262	ENST00000628078	SMG1	Q96Q15	3661 aa	Known RBP	13.7	□□□□□ -0.22
TCF4-262	ENST00000628078		F8VZ95	297 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078		H3BM21	787 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	PYCARD-AS1	I3L0S3	204 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	INSIG1	O15503	277 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	BUB1	O43683	1085 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	LRIG2	O94898	1065 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	CELA2B	P08218	269 aa	Predicted RBP	13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	PLEK	P08567	350 aa	Predicted RBP	13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	IGFALS	P35858	605 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	SCNN1A	P37088	669 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	LSS	P48449	732 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	THOP1	P52888	689 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	POLD3	Q15054	466 aa	Predicted RBP	13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	FAXC	Q5TGI0	409 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	ZCCHC8	Q6NZY4	707 aa	Known RBP	13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	SCYL2	Q6P3W7	929 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	ZNF605	Q86T29	641 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	NLRP14	Q86W24	1093 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	FAM181A	Q8N9Y4	354 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	MSANTD4	Q8NCY6	345 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	OR2AP1	Q8NGE2	309 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	KCNE4	Q8WWG9	221 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	VOPP1	Q96AW1	172 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	IFT43	Q96FT9	208 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	HIC2	Q96JB3	615 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	VCPIP1	Q96JH7	1222 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	ZNF578	Q96N58	590 aa	Predicted RBP	13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	STK33	Q9BYT3	514 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	CLSTN2	Q9H4D0	955 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	GPR27	Q9NS67	375 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	GULP1	Q9UBP9	304 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	HPCAL4	Q9UM19	191 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	RP1	P56715	2156 aa		13.7	□□□□□ -0.22
TCF4-262	ENST00000628078	TEX51	A0A1B0GUA7	166 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	TSPAN6	O43657	245 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	AP1G1	O43747	822 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	POP4	O95707	220 aa	Known RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	LSM8	O95777	96 aa	Known RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	RHOQ	P17081	205 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	SDC4	P31431	198 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	PFN3	P60673	137 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	POLR2F	P61218	127 aa	Known RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	SNRPD1	P62314	119 aa	Known RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	FMO1	Q01740	532 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	CFHR1	Q03591	330 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	LY6D	Q14210	128 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	NR0B2	Q15466	257 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	KLHL40	Q2TBA0	621 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	ARL13B	Q3SXY8	428 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	BROX	Q5VW32	411 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	GDPD4	Q6W3E5	623 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	RD3	Q7Z3Z2	195 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	PHACTR4	Q8IZ21	702 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	FAM172A	Q8WUF8	416 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	TSACC	Q96A04	125 aa	Predicted RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	CENPT	Q96BT3	561 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	EXOC2	Q96KP1	924 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	LENG8	Q96PV6	779 aa	Predicted RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	PCDHB18P	Q96TA0	734 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	CLPB	Q9H078	707 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	ASCL3	Q9NQ33	180 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	SIRPG	Q9P1W8	387 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	APOBEC3B	Q9UH17	382 aa	Known RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	NOCT	Q9UK39	431 aa	Known RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	ENTPD2	Q9Y5L3	495 aa		13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	COL27A1	Q8IZC6	1860 aa	Predicted RBP	13.69	□□□□□ -0.22
TCF4-262	ENST00000628078	LRRK1	Q38SD2	2015 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	EME2	A4GXA9	379 aa	Predicted RBP	13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	TK2	O00142	265 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	EPHB6	O15197	1021 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	YY2	O15391	372 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	KDELR3	O43731	214 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	RAMP2	O60895	175 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	TM7SF2	O76062	418 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	CYP1A1	P04798	512 aa	Predicted RBP	13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	PRKCG	P05129	697 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	GP1BA	P07359	652 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	TIMP2	P16035	220 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	TSHR	P16473	764 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	MMP8	P22894	467 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	RBMS1	P29558	406 aa	Known RBP	13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	RFC1	P35251	1148 aa	Predicted RBP	13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	EIF4A3	P38919	411 aa	Known RBP	13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	HDAC4	P56524	1084 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	TCP11X2	Q5H9J9	407 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	MANEAL	Q5VSG8	457 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	SLC35F3	Q8IY50	421 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	LSMEM2	Q8N112	164 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	FAM174A	Q8TBP5	190 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	CXorf40A	Q8TE69	158 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	ISG20	Q96AZ6	181 aa	Known RBP	13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	TBC1D31	Q96DN5	1066 aa		13.68	□□□□□ -0.22
TCF4-262	ENST00000628078	EPAS1	Q99814	870 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms