RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 LEFTY1O75610 366 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 CTSLP07711 333 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 MMP13P45452 471 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 NR2C2P49116 596 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 PEX5P50542 639 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 RENBPP51606 427 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 SLC10A7Q0GE19 358 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 SLC10A2Q12908 348 aaPredicted RBP18.34■□□□□ 0.53
CLN3-239ENST00000628023 ZNF211Q13398 564 aaPredicted RBP18.34■□□□□ 0.53
CLN3-239ENST00000628023 ST3GAL2Q16842 350 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 PSAPL1Q6NUJ1 521 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 USP30Q70CQ3 517 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 SYT12Q8IV01 421 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 TMEFF1Q8IYR6 380 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 TMIEQ8NEW7 156 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 P3H4Q92791 437 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 HDAC11Q96DB2 347 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 OSBPL8Q9BZF1 889 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 BTBD1Q9H0C5 482 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 HAUS2Q9NVX0 235 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 EVLQ9UI08 416 aaPredicted RBP18.34■□□□□ 0.53
CLN3-239ENST00000628023 MBD1Q9UIS9 605 aaPredicted RBP18.34■□□□□ 0.53
CLN3-239ENST00000628023 CHD8Q9HCK8 2581 aa18.34■□□□□ 0.53
CLN3-239ENST00000628023 DDX3YO15523 660 aaKnown RBP18.33■□□□□ 0.52
CLN3-239ENST00000628023 POP4O95707 220 aaKnown RBP18.33■□□□□ 0.52
CLN3-239ENST00000628023 PYGMP11217 842 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 CCNCP24863 283 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 PMLP29590 882 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 GKP32189 559 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 NOVA1P51513 510 aaKnown RBP18.33■□□□□ 0.52
CLN3-239ENST00000628023 IRX4P78413 519 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 AP1B1Q10567 949 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 RPS6KA1Q15418 735 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 MYLK3Q32MK0 819 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 SEL1L2Q5TEA6 688 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 MARC1Q5VT66 337 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 LYSMD4Q5XG99 296 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 CCDC13Q8IYE1 715 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 TSEN2Q8NCE0 465 aaKnown RBP18.33■□□□□ 0.52
CLN3-239ENST00000628023 LRRN4Q8WUT4 740 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 UBE2Q2Q8WVN8 375 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 HES6Q96HZ4 224 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 LRIG1Q96JA1 1093 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 OSBPL1AQ9BXW6 950 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 WSB2Q9NYS7 404 aaPredicted RBP18.33■□□□□ 0.52
CLN3-239ENST00000628023 SERGEFQ9UGK8 458 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 TTLL3Q9Y4R7 772 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 WASF2Q9Y6W5 498 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 SHROOM3Q8TF72 1996 aa18.33■□□□□ 0.52
CLN3-239ENST00000628023 TJP3O95049 919 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 IGLV3-19P01714 112 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 UGT2B4P06133 528 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 C7P10643 843 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 PECAM1P16284 738 aaPredicted RBP18.32■□□□□ 0.52
CLN3-239ENST00000628023 PTPN7P35236 360 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 HSPA9P38646 679 aaKnown RBP18.32■□□□□ 0.52
CLN3-239ENST00000628023 METAP1P53582 386 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 SHC2P98077 582 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 ADCY2Q08462 1091 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 CCDC15Q0P6D6 951 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 TRIM61Q5EBN2 209 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 CFAP58Q5T655 872 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 AADACL2Q6P093 401 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 BBS12Q6ZW61 710 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 ARMCX6Q7L4S7 300 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 AADATQ8N5Z0 425 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 DEFB119Q8N690 84 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 PAF1Q8N7H5 531 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 OLFM3Q96PB7 478 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 TSGA13Q96PP4 275 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 PSKH2Q96QS6 385 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 LGMNQ99538 433 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 GPR174Q9BXC1 333 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 SGK2Q9HBY8 427 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 SEPT10Q9P0V9 454 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 SAE1Q9UBE0 346 aaPredicted RBP18.32■□□□□ 0.52
CLN3-239ENST00000628023 FZD4Q9ULV1 537 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 EFR3BQ9Y2G0 817 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 GON4LQ3T8J9 2241 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 LAMA1P25391 3075 aa18.32■□□□□ 0.52
CLN3-239ENST00000628023 PLXND1Q9Y4D7 1925 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 GOLGA6L9A6NEM1 432 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 FAM47DPA6NHR8 397 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 MEI4A8MW99 385 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 PATE3B3GLJ2 98 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 PLK4O00444 970 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 MATN3O15232 486 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 SEMA4FO95754 770 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 PEX11BO96011 259 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 ACSL1P33121 698 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 HOXD12P35452 270 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 PTGER3P43115 390 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 SCNN1BP51168 640 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 PPIDQ08752 370 aaKnown RBP18.31■□□□□ 0.52
CLN3-239ENST00000628023 ITKQ08881 620 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 CNTN1Q12860 1018 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 HNRNPDQ14103 355 aaKnown RBP18.31■□□□□ 0.52
CLN3-239ENST00000628023 GRM3Q14832 879 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 UAP1L1Q3KQV9 507 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms