RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 SHROOM3Q8TF72 1996 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 PEX1O43933 1283 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 FKTNO75072 461 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 CDK4P11802 303 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 MYLK3Q32MK0 819 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 TMCO4Q5TGY1 634 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 KLC3Q6P597 504 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 CNTD1Q8N815 330 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 ALKBH8Q96BT7 664 aaKnown RBP14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 CERS2Q96G23 380 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 GMIPQ9P107 970 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 GIT1Q9Y2X7 761 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 PTCH2Q9Y6C5 1203 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 CYP2C18P33260 490 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 SEMA5AQ13591 1074 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 USP10Q14694 798 aaKnown RBP14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 PSTKQ8IV42 348 aaKnown RBP14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 TSNARE1Q96NA8 513 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 TASP1Q9H6P5 420 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 CHST12Q9NRB3 414 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 KCNK4Q9NYG8 393 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 PTTG2Q9NZH5 202 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 USP3Q9Y6I4 520 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 DICER1Q9UPY3 1922 aaKnown RBP14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 H3BSA7 217 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 PRRG1O14668 218 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 ETV4P43268 484 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 MPP1Q00013 466 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 C1QTNF12Q5T7M4 302 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 ESRP1Q6NXG1 681 aaKnown RBP14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 TMC7Q7Z402 723 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 PTAR1Q7Z6K3 402 aaPredicted RBP14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 RNF148Q8N7C7 305 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 ERLEC1Q96DZ1 483 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 MARK4Q96L34 752 aa14.65□□□□□ -0.06
SHROOM1-208ENST00000617339 J3KR12 359 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 CKBP12277 381 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 FDFT1P37268 417 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 GARSP41250 739 aaKnown RBP14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 CCR3P51677 355 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TMEM259Q4ZIN3 620 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 FBXO32Q969P5 355 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 RPRD1AQ96P16 312 aaPredicted RBP14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 MLPHQ9BV36 600 aaPredicted RBP14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 GPR62Q9BZJ7 368 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TMEM39AQ9NV64 488 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 UBAP1Q9NZ09 502 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TLL2Q9Y6L7 1015 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 A0A1B0GTW7 788 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 SLC12A8A0AV02 714 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 DCLK1O15075 740 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TFAP2AP05549 437 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 SMIM18P0DKX4 95 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 RPL5P46777 297 aaKnown RBP14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TEX44Q53QW1 395 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 UGT2A3Q6UWM9 527 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 KCNMB4Q86W47 210 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TMEM86AQ8N2M4 240 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 SNX31Q8N9S9 440 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 ZNF296Q8WUU4 475 aaPredicted RBP14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 A0A096LPK6 155 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 E9PBE3 544 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 KLHL41O60662 606 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TGDSO95455 350 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 PPIDQ08752 370 aaKnown RBP14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 MPP3Q13368 585 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 C6orf52Q5T4I8 152 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 FSTL4Q6MZW2 842 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 AMIGO2Q86SJ2 522 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 MCUQ8NE86 351 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 GPAMQ9HCL2 828 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 TBC1D13Q9NVG8 400 aa14.64□□□□□ -0.07
SHROOM1-208ENST00000617339 OR51F1A6NGY5 319 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 ADAMTS4O75173 837 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 CCR1P32246 355 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 DPYSQ14117 519 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 MBTPS1Q14703 1052 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 ATG16L1Q676U5 607 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 TMEM169Q96HH4 297 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 PRICKLE1Q96MT3 831 aaPredicted RBP14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 SMIM14Q96QK8 99 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 CCDC106Q9BWC9 280 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 SNX15Q9NRS6 342 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 BPTFQ12830 3046 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 LOC285556D6RIA3 1793 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 TK2O00142 265 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 AURKAO14965 403 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 FOXD2O60548 495 aaPredicted RBP14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 FBXO21O94952 628 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 ALDH1A3P47895 512 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 PRPSAP1Q14558 356 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 XKR4Q5GH76 650 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 ZBTB46Q86UZ6 589 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 TMEM173Q86WV6 379 aaPredicted RBP14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 SLC41A1Q8IVJ1 513 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 ARL10Q8N8L6 244 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 ZSCAN18Q8TBC5 510 aaPredicted RBP14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 DCUN1D1Q96GG9 259 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms