RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 UNC45BQ8IWX7 931 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 OR13F1Q8NGS4 319 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 SLC22A8Q8TCC7 542 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 TFB1MQ8WVM0 346 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 MARVELD3Q96A59 401 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 APOPT1Q96IL0 206 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 TEX13BQ9BXU2 312 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 ACAD9Q9H845 621 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 CHST12Q9NRB3 414 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 SLC9A2Q9UBY0 812 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 PRPF19Q9UMS4 504 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 YKT6O15498 198 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 FTLP02792 175 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 PIK3R1P27986 724 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 HTR2BP41595 481 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 WNT7BP56706 349 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 FAAP100Q0VG06 881 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 SQLEQ14534 574 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 FASTKD3Q14CZ7 662 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 TCEAL1Q15170 157 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 MAPK11Q15759 364 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 LEXMQ3ZCV2 418 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 DCUN1D2Q6PH85 259 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 CORO6Q6QEF8 472 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 FRMD7Q6ZUT3 714 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 NIPA1Q7RTP0 329 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 LACC1Q8IV20 430 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 COLGALT2Q8IYK4 626 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 FLCNQ8NFG4 579 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 SLC2A14Q8TDB8 520 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 E2F7Q96AV8 911 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 KREMEN1Q96MU8 473 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 PCDHB18PQ96TA0 734 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 AGPAT1Q99943 283 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 USB1Q9BQ65 265 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 POLR3FQ9H1D9 316 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 ELP3Q9H9T3 547 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 C20orf96Q9NUD7 363 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 WBP11Q9Y2W2 641 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 NOP56O00567 594 aaKnown RBP10.33□□□□□ -0.76
VPS39-214ENST00000614932 RAD51BO15315 384 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 AKAP10O43572 662 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 USP2O75604 605 aaPredicted RBP10.33□□□□□ -0.76
VPS39-214ENST00000614932 MX2P20592 715 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 TNFAIP2Q03169 654 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 NEDD8Q15843 81 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 ZFP69Q49AA0 526 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 ERAP2Q6P179 960 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 TSNARE1Q96NA8 513 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 GPBP1L1Q9HC44 474 aaPredicted RBP10.33□□□□□ -0.76
VPS39-214ENST00000614932 MAT2BQ9NZL9 334 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 A0A0B4J269 797 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 A0A0G2JMP0 313 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 C16orf96A6NNT2 1141 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 PI15O43692 258 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 RNGTTO60942 597 aaKnown RBP10.33□□□□□ -0.76
VPS39-214ENST00000614932 KCNK2O95069 426 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 S100A6P06703 90 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 TRIM32Q13049 653 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 TUBB3Q13509 450 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 CCDC142Q17RM4 750 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 ESCO2Q56NI9 601 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 ZBTB41Q5SVQ8 909 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 ATAD3CQ5T2N8 411 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 C16orf46Q6P387 395 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 BHLHE22Q8NFJ8 381 aaPredicted RBP10.33□□□□□ -0.76
VPS39-214ENST00000614932 ZFP90Q8TF47 636 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 TFAP2CQ92754 450 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 CCDC120Q96HB5 630 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 GLT1D1Q96MS3 346 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 SECISBP2Q96T21 854 aaKnown RBP10.33□□□□□ -0.76
VPS39-214ENST00000614932 TBCBQ99426 244 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 PAFAH2Q99487 392 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 ACTR3BQ9P1U1 418 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 MTRRQ9UBK8 725 aa10.33□□□□□ -0.76
VPS39-214ENST00000614932 UBE4BO95155 1302 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 RGPD3A6NKT7 1758 aaPredicted RBP10.32□□□□□ -0.76
VPS39-214ENST00000614932 RGPD4Q7Z3J3 1758 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 A0A0X1KG70 313 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 LOC100653049A0A140TA62 436 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 PLK4O00444 970 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 KRT34O76011 436 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 PSAPP07602 524 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 SFNP31947 248 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 GPR85P60893 370 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 BFSP2Q13515 415 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 NHSL2Q5HYW2 709 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 APOBEC3FQ8IUX4 373 aaKnown RBP10.32□□□□□ -0.76
VPS39-214ENST00000614932 SLC9A9Q8IVB4 645 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 NUDCD3Q8IVD9 361 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 MFSD4AQ8N468 514 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 LRRC20Q8TCA0 184 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 PDCD6IPQ8WUM4 868 aaKnown RBP10.32□□□□□ -0.76
VPS39-214ENST00000614932 NXPE3Q969Y0 559 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 SYT11Q9BT88 431 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 TRPV6Q9H1D0 765 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 CYP26B1Q9NR63 512 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 ZNF112Q9UJU3 913 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 PACSIN3Q9UKS6 424 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms