RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ADPRHP54922 357 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 AP1B1Q10567 949 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 GRM3Q14832 879 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 RPS6KA1Q15418 735 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 HS1BP3Q53T59 392 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 ZNF805Q5CZA5 627 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 PIP5KL1Q5T9C9 394 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 GDPD4Q6W3E5 623 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 CADM4Q8NFZ8 388 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 HAUS1Q96CS2 278 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 C6orf106Q9H6K1 298 aaPredicted RBP16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 DYRK4Q9NR20 520 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 TRMT1Q9NXH9 659 aaKnown RBP16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 PYCARDQ9ULZ3 195 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 KCNK1O00180 336 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 TJP3O95049 919 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 PIGNO95427 931 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 CR2P20023 1033 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 PLA2G5P39877 138 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 MAXP61244 160 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 B4GALNT4Q76KP1 1039 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 ERN2Q76MJ5 926 aaKnown RBP16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 PARS2Q7L3T8 475 aaKnown RBP16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 ARMCX6Q7L4S7 300 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 OR14C36Q8NHC7 312 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 FOXJ1Q92949 421 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 FAM122AQ96E09 287 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 NSMCE3Q96MG7 304 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 HSPA12BQ96MM6 686 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 KLHL32Q96NJ5 620 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 TUBGCP5Q96RT8 1024 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 TLR10Q9BXR5 811 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 PCED1AQ9H1Q7 454 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 NT5MQ9NPB1 228 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 RBM22Q9NW64 420 aaKnown RBP eCLIP16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 AMACRQ9UHK6 382 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 TTC24A2A3L6 582 aaPredicted RBP16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 C16orf96A6NNT2 1141 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 METTL12A8MUP2 240 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 C10orf142B7Z368 130 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 PLRG1O43660 514 aaKnown RBP16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 EPN2O95208 641 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 RETP07949 1114 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 MAPK8P45983 427 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 NEK3P51956 506 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 TAS2R38P59533 333 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 AP1S1P61966 158 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 IFI35P80217 286 aaPredicted RBP16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 CCDC15Q0P6D6 951 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 ZBTB17Q13105 803 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 PRKD1Q15139 912 aaPredicted RBP16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 CCDC181Q5TID7 509 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 NCEH1Q6PIU2 408 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 CAMK1DQ8IU85 385 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 OR2T34Q8NGX1 318 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 TFB1MQ8WVM0 346 aaKnown RBP16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 ZNF641Q96N77 438 aaPredicted RBP16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 NUDCD1Q96RS6 583 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 IL12RB2Q99665 862 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 GMEB2Q9UKD1 530 aa16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 RIF1Q5UIP0 2472 aaKnown RBP16.74■□□□□ 0.27
CCDC28A-202ENST00000611852 EP300Q09472 2414 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 FAM47DPA6NHR8 397 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 LRRC72A6NJI9 287 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 USP27XA6NNY8 438 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 JCHAINP01591 159 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 ADRB3P13945 408 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 OTUD4Q01804 1114 aaKnown RBP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 KLF1Q13351 362 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 NOMO1Q15155 1222 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 RALGPS1Q5JS13 557 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 LYSMD4Q5XG99 296 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 ALG1LQ6GMV1 187 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 FBXL19Q6PCT2 694 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 ZC3H18Q86VM9 953 aaKnown RBP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 ACTL9Q8TC94 416 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 RUBCNQ92622 972 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 POLR1EQ9GZS1 481 aaKnown RBP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 CARD9Q9H257 536 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 KDM4CQ9H3R0 1056 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 SUV39H2Q9H5I1 410 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 ATP13A3Q9H7F0 1226 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 NOD2Q9HC29 1040 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 SCUBE2Q9NQ36 999 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 NCDNQ9UBB6 729 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 DKK3Q9UBP4 350 aa16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 TNRC6BQ9UPQ9 1833 aaKnown RBP16.73■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3DA0A087WVF3 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3IA0A087WXS9 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3EA0A087X179 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3KA0A087X1G2 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 BCLAF3A2AJT9 711 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3FA6NER0 549 aaPredicted RBP16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3LB9A6J9 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 HLA-DQB2P05538 268 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3HP0C7X1 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 ITPKAP23677 461 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 SERPINA4P29622 427 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms