RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LY6DQ14210 128 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 BECN1Q14457 450 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 GRM3Q14832 879 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 CLPPQ16740 277 aaPredicted RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 ZSCAN23Q3MJ62 389 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 SLC25A52Q3SY17 297 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ZNF805Q5CZA5 627 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 OR6B2Q6IFH4 312 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 GUSBP11Q6P575 273 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 MACC1Q6ZN28 852 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ZNF574Q6ZN55 896 aaPredicted RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 GBP6Q6ZN66 633 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 DPY19L3Q6ZPD9 716 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 RAB11FIP2Q7L804 512 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ARCQ7LC44 396 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 PRICKLE2Q7Z3G6 844 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 GKN2Q86XP6 184 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 PHACTR4Q8IZ21 702 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 FMR1NBQ8N0W7 255 aaPredicted RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 SLC22A18ASQ8N1D0 253 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 FBXO39Q8N4B4 442 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ARL10Q8N8L6 244 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 TMEM35BQ8NCS4 154 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 KLK6Q92876 244 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 KAT5Q92993 513 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ARRDC3Q96B67 414 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ATXN7L3BQ96GX2 97 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 BMFQ96LC9 184 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 KREMEN1Q96MU8 473 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 SPON2Q9BUD6 331 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ZYG11BQ9C0D3 744 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 TKTL2Q9H0I9 626 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ATP13A1Q9HD20 1204 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ARHGEF38Q9NXL2 777 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.4□□□□□ -1.383e-6■■■■□ 19.4
CUX1-220ENST00000607092 PPARGC1AQ9UBK2 798 aaKnown RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 APEX2Q9UBZ4 518 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ZFR2Q9UPR6 939 aaKnown RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 CA5BQ9Y2D0 317 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ENTPD2Q9Y5L3 495 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 TRPM6Q9BX84 2022 aa6.4□□□□□ -1.39
CUX1-220ENST00000607092 BOD1L1Q8NFC6 3051 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 IGLV3-10A0A075B6K4 115 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 LY6G6EA0A0G2JKS1 128 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 A0A1W2PQC6 194 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 TRIM49BA6NDI0 452 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 POM121BA6NF01 834 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 C16orf96A6NNT2 1141 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 PDE2AO00408 941 aaPredicted RBP6.39□□□□□ -1.39
CUX1-220ENST00000607092 NEBLO76041 1014 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 TM7SF2O76062 418 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 RASGRP1O95267 797 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 LSM8O95777 96 aaKnown RBP6.39□□□□□ -1.39
CUX1-220ENST00000607092 MT-CO1P00395 513 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 CTSEP14091 401 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 PNLIPP16233 465 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 XPAP23025 273 aaPredicted RBP6.39□□□□□ -1.39
CUX1-220ENST00000607092 CCKBRP32239 447 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 MAPKAPK2P49137 400 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 SULT1E1P49888 294 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 DNA2P51530 1060 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 CCNHP51946 323 aaPredicted RBP6.39□□□□□ -1.39
CUX1-220ENST00000607092 ADKP55263 362 aaKnown RBP6.39□□□□□ -1.39
CUX1-220ENST00000607092 GNA12Q03113 381 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 PAK1Q13153 545 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 CLN3Q13286 438 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 PKP1Q13835 747 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 EXOC3L4Q17RC7 722 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 DEFB133Q30KQ1 61 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 ZNF542PQ5EBM4 170 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 PRRT3Q5FWE3 981 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 FAXCQ5TGI0 409 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 SEL1L3Q68CR1 1132 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 TTI2Q6NXR4 508 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 FOXR1Q6PIV2 292 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 OLFML1Q6UWY5 402 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 JAMLQ86YT9 394 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 ARHGEF19Q8IW93 802 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 RYBPQ8N488 228 aaPredicted RBP6.39□□□□□ -1.39
CUX1-220ENST00000607092 CCDC112Q8NEF3 446 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 OR2AP1Q8NGE2 309 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 HCAR2Q8TDS4 363 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 CXorf40AQ8TE69 158 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 NELFBQ8WX92 580 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 SHC3Q92529 594 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 NT5C3BQ969T7 300 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 C18orf8Q96DM3 657 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 GDAP1L1Q96MZ0 367 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 CPXM1Q96SM3 734 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 NPY6RQ99463 290 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 CMKLR1Q99788 373 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 CCDC3Q9BQI4 270 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 MAGEH1Q9H213 219 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 ADNPQ9H2P0 1102 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 GOLPH3LQ9H4A5 285 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 SYNDIG1Q9H7V2 258 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 EPB41L5Q9HCM4 733 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 FZD3Q9NPG1 666 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 KCTD5Q9NXV2 234 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 HECAQ9UBI9 543 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms