RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 WASF3Q9UPY6 502 aa14.35□□□□□ -0.11
LIG1-218ENST00000599322 APOBEC2Q9Y235 224 aaKnown RBP14.35□□□□□ -0.11
LIG1-218ENST00000599322 CEP295Q9C0D2 2601 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 C16orf96A6NNT2 1141 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 AP1G1O43747 822 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 PRAMEF11O60813 436 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 MFAP3LO75121 409 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 ZNF821O75541 412 aaPredicted RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 CD160O95971 181 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 ITGAVP06756 1048 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 KRT7P08729 469 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 TMEM253P0C7T8 217 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 RARAP10276 462 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 NFKBIAP25963 317 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 GRK6P43250 576 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 ADKP55263 362 aaKnown RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 CDH6P55285 790 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 IL10RBQ08334 325 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 NUMA1Q14980 2115 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 ZNF423Q2M1K9 1284 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 HS1BP3Q53T59 392 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 ATXN7L2Q5T6C5 722 aaPredicted RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 SARM1Q6SZW1 724 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 KCTD6Q8NC69 237 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 ELF4Q99607 663 aaPredicted RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 CPEB1Q9BZB8 566 aaKnown RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 NOL6Q9H6R4 1146 aaKnown RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 NHEJ1Q9H9Q4 299 aaPredicted RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 RCOR3Q9P2K3 495 aaPredicted RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 IPO11Q9UI26 975 aaKnown RBP14.34□□□□□ -0.11
LIG1-218ENST00000599322 MFHAS1Q9Y4C4 1052 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 ACTL7AQ9Y615 435 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 WDFY3Q8IZQ1 3526 aa14.34□□□□□ -0.11
LIG1-218ENST00000599322 AKAP13Q12802 2813 aa14.33□□□□□ -0.11
LIG1-218ENST00000599322 CHD6Q8TD26 2715 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 H0Y8X5 98 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 GJB3O75712 270 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 NEBLO76041 1014 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 PROSCO94903 275 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 TOP3BO95985 862 aaKnown RBP14.33□□□□□ -0.12
LIG1-218ENST00000599322 SERPINA4P29622 427 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 GJC1P36383 396 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 TAS2R38P59533 333 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 POLR2LP62875 67 aaKnown RBP14.33□□□□□ -0.12
LIG1-218ENST00000599322 ELP6Q0PNE2 266 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 FOXC1Q12948 553 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 ZNF235Q14590 738 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 PDK2Q15119 407 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 ERAP2Q6P179 960 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 LAYNQ6UX15 382 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 PARS2Q7L3T8 475 aaKnown RBP14.33□□□□□ -0.12
LIG1-218ENST00000599322 DCP2Q8IU60 420 aaKnown RBP14.33□□□□□ -0.12
LIG1-218ENST00000599322 LRRC49Q8IUZ0 686 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 RHOT2Q8IXI1 618 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 HCAR2Q8TDS4 363 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 CXorf40AQ8TE69 158 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 KLK6Q92876 244 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 BTBD6Q96KE9 485 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 ZNF641Q96N77 438 aaPredicted RBP14.33□□□□□ -0.12
LIG1-218ENST00000599322 ZNF599Q96NL3 588 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 TUBGCP5Q96RT8 1024 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 ORAI3Q9BRQ5 295 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 CALN1Q9BXU9 219 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 SLC17A9Q9BYT1 436 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 ATP13A3Q9H7F0 1226 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 ERVMER34-1Q9H9K5 563 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 IL21RQ9HBE5 538 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 SEPT3Q9UH03 358 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 FNDC3AQ9Y2H6 1198 aaKnown RBP14.33□□□□□ -0.12
LIG1-218ENST00000599322 FADS3Q9Y5Q0 445 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 ASPMQ8IZT6 3477 aa14.33□□□□□ -0.12
LIG1-218ENST00000599322 A0A1B0GTQ1 180 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 SPAARA0A1B0GVQ0 90 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 A0A1W2PR77 199 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 C1QTNF9BB2RNN3 333 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 J3KR12 359 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 KCNK3O14649 394 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 FPGTO14772 594 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 PCDHGA12O60330 932 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 IPO7O95373 1038 aaKnown RBP14.32□□□□□ -0.12
LIG1-218ENST00000599322 PROS1P07225 676 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 C1QTNF9P0C862 333 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 THEGLP0DJG4 465 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 PRLRP16471 622 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 SPINK2P20155 84 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 AMPD1P23109 780 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 GKP32189 559 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 HSPA9P38646 679 aaKnown RBP14.32□□□□□ -0.12
LIG1-218ENST00000599322 NXPH1P58417 271 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 BNC1Q01954 994 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 BCL2L1Q07817 233 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 CYTH1Q15438 398 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 POLNQ7Z5Q5 900 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 SRLQ86TD4 932 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 ATPAF2Q8N5M1 289 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 CSPG4P5Q96PW8 444 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 MYOCQ99972 504 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 TMEM121BQ9BXQ6 578 aaPredicted RBP14.32□□□□□ -0.12
LIG1-218ENST00000599322 KLC2Q9H0B6 622 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 SUV39H2Q9H5I1 410 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms