RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 HAUS1Q96CS2 278 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 HDAC11Q96DB2 347 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 RBM41Q96IZ5 413 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 CINPQ9BW66 212 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 HDAC8Q9BY41 377 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 CPEB1Q9BZB8 566 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 C10orf88Q9H8K7 445 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 NT5MQ9NPB1 228 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 NCDNQ9UBB6 729 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 SEPT3Q9UH03 358 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 GGT7Q9UJ14 662 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 PILRBQ9UKJ0 227 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 NUP205Q92621 2012 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 TCRBV7S2A1N4TA0A589 114 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 WNT9AO14904 365 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 FSBPO95073 299 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 JCHAINP01591 159 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ZFXP17010 805 aaPredicted RBP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ITGB7P26010 798 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 HOXD11P31277 338 aaPredicted RBP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 MPLP40238 635 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 MMP13P45452 471 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 SCNN1BP51168 640 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 PPIDQ08752 370 aaKnown RBP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 NIPAL4Q0D2K0 466 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ZBTB17Q13105 803 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 HNRNPDQ14103 355 aaKnown RBP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 TFDP2Q14188 446 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ODF2Q5BJF6 829 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ZNF805Q5CZA5 627 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 MEI1Q5TIA1 1274 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 MARC1Q5VT66 337 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 KIAA0895LQ68EN5 471 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 BBS12Q6ZW61 710 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 SYCE1Q8N0S2 351 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 OR2T34Q8NGX1 318 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 FATE1Q969F0 183 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 LRIG1Q96JA1 1093 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 MGME1Q9BQP7 344 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 CEP41Q9BYV8 373 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 OSBPL8Q9BZF1 889 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 NOD2Q9HC29 1040 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 FSCN3Q9NQT6 498 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 RXFP3Q9NSD7 469 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 RBM22Q9NW64 420 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 EIF2B4Q9UI10 523 aaKnown RBP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 GMEB2Q9UKD1 530 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 PYCARDQ9ULZ3 195 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ZFR2Q9UPR6 939 aaKnown RBP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ITM2BQ9Y287 266 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 FADS3Q9Y5Q0 445 aa14.38□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3DA0A087WVF3 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3IA0A087WXS9 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3EA0A087X179 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3KA0A087X1G2 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3FA6NER0 549 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3LB9A6J9 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TRAFD1O14545 582 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 PRKCGP05129 697 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 HLA-DQB2P05538 268 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 PTMAP06454 111 aaKnown RBP14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3HP0C7X1 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 ADRB3P13945 408 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 CCNB1P14635 433 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 MX2P20592 715 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 PTPN7P35236 360 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 COPS2P61201 443 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 ZNF235Q14590 738 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 PTPRRQ15256 657 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 PEAR1Q5VY43 1037 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3GQ6DHY5 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3CQ6IPX1 549 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 CYP2U1Q7Z449 544 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 CCDC13Q8IYE1 715 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 TBC1D3Q8IZP1 549 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 ARRDC2Q8TBH0 407 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 NUDCD1Q96RS6 583 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 IL12RB2Q99665 862 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 FAM118BQ9BPY3 351 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 SUV39H2Q9H5I1 410 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 SEMA4GQ9NTN9 838 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 ATP8A1Q9Y2Q0 1164 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 PCDHGC4Q9Y5F7 938 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 PCDHGA5Q9Y5G8 931 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 OTOGLQ3ZCN5 2332 aa14.37□□□□□ -0.11
SHKBP1-217ENST00000598558 SDK1Q7Z5N4 2213 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 TSPAN11A1L157 253 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 USP27XA6NNY8 438 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 MIF4GDA9UHW6 222 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 AREL1O15033 823 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 SLC7A4O43246 635 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 ZNF806P0C7X5 589 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 TGM2P21980 687 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 MAT2AP31153 395 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 RENBPP51606 427 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 NEK3P51956 506 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 IRX4P78413 519 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms