RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, human

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMCHD1-208	ENST00000583344	GRAMD1B	Q3KR37	738 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	TDRD12	Q587J7	1177 aa	Known RBP	4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ZNF569	Q5MCW4	686 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	IZUMO3	Q5VZ72	239 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	C8orf82	Q6P1X6	216 aa	Predicted RBP	4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	KIAA1324	Q6UXG2	1013 aa	Known RBP	4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	HORMAD2	Q8N7B1	307 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PARD3B	Q8TEW8	1205 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PPM1E	Q8WY54	764 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	KIAA1191	Q96A73	305 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	SLC39A13	Q96H72	371 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PRPF18	Q99633	342 aa	Known RBP	4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	C1QTNF4	Q9BXJ3	329 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PANK2	Q9BZ23	570 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	MAF1	Q9H063	256 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PDCL3	Q9H2J4	239 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	HIPK3	Q9H422	1215 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	CERS4	Q9HA82	394 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	KCNG2	Q9UJ96	466 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	NFU1	Q9UMS0	254 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	LZTS1	Q9Y250	596 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	CKAP5	Q14008	2032 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	QRICH2	Q9H0J4	1663 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	MLH3	Q9UHC1	1453 aa		4.37	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ABCC3	O15438	1527 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	CDC42BPG	Q6DT37	1551 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	MROH2A	A6NES4	1674 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	KIDINS220	Q9ULH0	1771 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PRSS47	A8MTI9	375 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ASNA1	O43681	348 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PLA2G6	O60733	806 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	THPO	P40225	353 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	CYP2J2	P51589	502 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	SEC61A1	P61619	476 aa	Known RBP	4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PKP1	Q13835	747 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PLCB4	Q15147	1175 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ZNF718	Q3SXZ3	478 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	H1FNT	Q75WM6	255 aa	Predicted RBP	4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ITPRIP	Q8IWB1	547 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	NRSN1	Q8IZ57	195 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	OR14A16	Q8NHC5	309 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	BICD2	Q8TD16	824 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	MUL1	Q969V5	352 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	RTP4	Q96DX8	246 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	HDHD5	Q9BXW7	423 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	STK33	Q9BYT3	514 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	RETREG1	Q9H6L5	497 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	DCTPP1	Q9H773	170 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344		Q9N2J8	555 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ZDHHC7	Q9NXF8	308 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ERRFI1	Q9UJM3	462 aa	Predicted RBP	4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	TULP4	Q9NRJ4	1543 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	UGGT1	Q9NYU2	1555 aa		4.36	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PIK3C2B	O00750	1634 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ADAMTSL3	P82987	1691 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	SCN5A	Q14524	2016 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	DENND3	A2RUS2	1198 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	AQP12B	A6NM10	295 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ZNF500	O60304	480 aa	Predicted RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	BAG4	O95429	457 aa	Known RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	HSP90AB1	P08238	724 aa	Known RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	UNG	P13051	313 aa	Predicted RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PRPH2	P23942	346 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	TNNT2	P45379	298 aa	Predicted RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	NEK3	P51956	506 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	RCAN1	P53805	252 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	GRSF1	Q12849	480 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	MORC3	Q14149	939 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	KRTAP24-1	Q3LI83	254 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ANKRD45	Q5TZF3	282 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	FAM171A1	Q5VUB5	890 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	IL31	Q6EBC2	164 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ZSCAN30	Q86W11	494 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	RPAP2	Q8IXW5	612 aa	Predicted RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PAF1	Q8N7H5	531 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PJA1	Q8NG27	643 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	CEP76	Q8TAP6	659 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	HMGB4	Q8WW32	186 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	TRIM44	Q96DX7	344 aa	Predicted RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	NAP1L5	Q96NT1	182 aa	Predicted RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	TP63	Q9H3D4	680 aa	Predicted RBP	4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PPCS	Q9HAB8	311 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	OCIAD1	Q9NX40	245 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	TAGLN3	Q9UI15	199 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	CNTN6	Q9UQ52	1028 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	DAAM1	Q9Y4D1	1078 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	RAI2	Q9Y5P3	530 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	PTCH1	Q13635	1447 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	NPAT	Q14207	1427 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	YEATS2	Q9ULM3	1422 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	ANKRD26	Q9UPS8	1709 aa		4.35	□□□□□ -1.71
SMCHD1-208	ENST00000583344	FAM90A18P	A6NE21	464 aa		4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	FAM90A16P	A6NEW6	464 aa		4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	MBD3L5	A6NJ08	208 aa	Predicted RBP	4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	FAM90A9P	A6NNJ1	464 aa		4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	FAM90A5P	A8MXJ8	464 aa		4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	FAM90A15P	P0C7V4	464 aa		4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	FAM90A14P	P0C7W9	464 aa		4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	GNLY	P22749	145 aa		4.34	□□□□□ -1.71
SMCHD1-208	ENST00000583344	TYK2	P29597	1187 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms