RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PPHLN1Q8NEY8 458 aaKnown RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 MDM1Q8TC05 714 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 MZB1Q8WU39 189 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 EXOC2Q96KP1 924 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 MGME1Q9BQP7 344 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 IL22Q9GZX6 179 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 TRABDQ9H4I3 376 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 CNOT10Q9H9A5 744 aaKnown RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 DZANK1Q9NVP4 752 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 HAUS2Q9NVX0 235 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 PSD3Q9NYI0 1048 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 SLC17A6Q9P2U8 582 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 VPS51Q9UID3 782 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 ZMYM5Q9UJ78 669 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 DENND4AQ7Z401 1863 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 IQANK1A0A1B0GTG1 560 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 A0A1W2PPM1 405 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 MAGEB16A2A368 324 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CCDC78A2IDD5 438 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 SHOX2O60902 331 aaPredicted RBP10.64□□□□□ -0.71
SS18-217ENST00000580958 USP1O94782 785 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 TMCC1O94876 653 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 PAPLNO95428 1278 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CD160O95971 181 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 ERVK-10P10266 1014 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 BRAFP15056 766 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CHN1P15882 459 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 TCF3P15923 654 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 NMBRP28336 390 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CD70P32970 193 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 MDH1P40925 334 aaKnown RBP10.64□□□□□ -0.71
SS18-217ENST00000580958 SERPINH1P50454 418 aaKnown RBP10.64□□□□□ -0.71
SS18-217ENST00000580958 MGAT5Q09328 741 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 NAB1Q13506 487 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 KCNC3Q14003 757 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 SEPT6Q14141 434 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CBX2Q14781 532 aaPredicted RBP10.64□□□□□ -0.71
SS18-217ENST00000580958 PCID2Q5JVF3 399 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 SIRPB2Q5JXA9 342 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 MPP7Q5T2T1 576 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 PKN3Q6P5Z2 889 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CYS1Q717R9 158 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 TMEM135Q86UB9 458 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 LRRC6Q86X45 466 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 TMEM25Q86YD3 366 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 DCAF4L2Q8NA75 395 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-217ENST00000580958 FIBINQ8TAL6 211 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 TTC17Q96AE7 1141 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CERS2Q96G23 380 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 FEM1CQ96JP0 617 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 NSMCE3Q96MG7 304 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 PSKH2Q96QS6 385 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 CDCA3Q99618 268 aaPredicted RBP10.64□□□□□ -0.71
SS18-217ENST00000580958 KIFC1Q9BW19 673 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 APOL5Q9BWW9 433 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 KIF9Q9HAQ2 790 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 NOD2Q9HC29 1040 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 KCNK9Q9NPC2 374 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 PPANQ9NQ55 473 aaKnown RBP10.64□□□□□ -0.71
SS18-217ENST00000580958 CHRAC1Q9NRG0 131 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 IL1RAPL1Q9NZN1 696 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 KIAA1522Q9P206 1035 aaPredicted RBP10.64□□□□□ -0.71
SS18-217ENST00000580958 LHX3Q9UBR4 397 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 TCAF1Q9Y4C2 921 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 ACTL7BQ9Y614 415 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 FAM169AQ9Y6X4 670 aa10.64□□□□□ -0.71
SS18-217ENST00000580958 KIAA1549LQ6ZVL6 1849 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 SCN8AQ9UQD0 1980 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 ZCWPW2A0A1B0GU75 182 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 LOC285095A0A1B0GVY8 99 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 TMEM120BA0PK00 339 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 TRIM49D1C9J1S8 452 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 INSIG1O15503 277 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 SPAG7O75391 227 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 SERPINF2P08697 491 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 ATXN1LP0C7T5 689 aaKnown RBP10.63□□□□□ -0.71
SS18-217ENST00000580958 CR2P20023 1033 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 SCNN1BP51168 640 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 CDK18Q07002 472 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 FRG1Q14331 258 aaKnown RBP10.63□□□□□ -0.71
SS18-217ENST00000580958 GALNT3Q14435 633 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 SLC1A5Q15758 541 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 SLC14A2Q15849 920 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 C4orf33Q8N1A6 199 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 ANKRD42Q8N9B4 389 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 MGARPQ8TDB4 240 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 CDKL2Q92772 493 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 IRF7Q92985 503 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 TIFAQ96CG3 184 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 MRPL38Q96DV4 380 aaKnown RBP10.63□□□□□ -0.71
SS18-217ENST00000580958 RSPRY1Q96DX4 576 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 MFSD3Q96ES6 412 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 IFT43Q96FT9 208 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 LMLNQ96KR4 655 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 NUDCD1Q96RS6 583 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 LINC00597Q9H2U6 94 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 ARNT2Q9HBZ2 717 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 MRM3Q9HC36 420 aaKnown RBP10.63□□□□□ -0.71
SS18-217ENST00000580958 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms