RNA–Protein interactions for RNA: ENST00000580646.5

GGA3-209, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 4

Gene GGA3, Length 829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-209ENST00000580646 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.05□□□□□ -0.8
GGA3-209ENST00000580646 TTC34A8MYJ7 566 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 DFFAO00273 331 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 ARHGAP33O14559 1287 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PPP1R12AO14974 1030 aaPredicted RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 MCF2LO15068 1137 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 MAFKO60675 156 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 CST8O60676 142 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 RNASEH1O60930 286 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 ZNF821O75541 412 aaPredicted RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 TJP3O95049 919 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PEX11BO96011 259 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 MT-CO1P00395 513 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 SYPP08247 313 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PYGMP11217 842 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 ACSL1P33121 698 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 HSPA9P38646 679 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 CSNK1DP48730 415 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 GBE1Q04446 702 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PPIDQ08752 370 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 NSUN2Q08J23 767 aaKnown RBP eCLIP10.04□□□□□ -0.8
GGA3-209ENST00000580646 SFSWAPQ12872 951 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 HNRNPDQ14103 355 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 PDK1Q15118 436 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 RPS6KA1Q15418 735 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 TTC31Q49AM3 519 aaPredicted RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 DNTTIP2Q5QJE6 756 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 N4BP2L1Q5TBK1 243 aaPredicted RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 DCAF12L1Q5VU92 463 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PSAPL1Q6NUJ1 521 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 DSG4Q86SJ6 1040 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 ZNF354CQ86Y25 554 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 RFX6Q8HWS3 928 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 LRIG1Q96JA1 1093 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 GTPBP2Q9BX10 602 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 BTBD1Q9H0C5 482 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 MIR1-1HGQ9H1L0 117 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PCED1AQ9H1Q7 454 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 SP110Q9HB58 689 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PYCARDQ9ULZ3 195 aa10.04□□□□□ -0.8
GGA3-209ENST00000580646 PACSIN2Q9UNF0 486 aaPredicted RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 FARP1Q9Y4F1 1045 aaPredicted RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 TNRC6BQ9UPQ9 1833 aaKnown RBP10.04□□□□□ -0.8
GGA3-209ENST00000580646 A0A1B0GTW7 788 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 J3KR12 359 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 MATN3O15232 486 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 SMAD6O43541 496 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 KIF5CO60282 957 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 TMCC1O94876 653 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 SEMA4FO95754 770 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 KRT10P13645 584 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 CSRP1P21291 193 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 RECQLP46063 649 aaPredicted RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 NUMBP49757 651 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 NOVA1P51513 510 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 RENBPP51606 427 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 SNRPD1P62314 119 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 SLC10A2Q12908 348 aaPredicted RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 KLF1Q13351 362 aaPredicted RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 XRCC4Q13426 336 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 GRM3Q14832 879 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 CST6Q15828 149 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 ACCSLQ4AC99 568 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 CARD16Q5EG05 197 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 RALGPS1Q5JS13 557 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 SEL1L2Q5TEA6 688 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 LINGO4Q6UY18 593 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 Q6ZVU0 165 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 MMAAQ8IVH4 418 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 TP53INP2Q8IXH6 220 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 BBS5Q8N3I7 341 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 HDDC3Q8N4P3 179 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 ZCCHC9Q8N567 271 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 MINDY1Q8N5J2 469 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 TEX26Q8N6G2 289 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 TTC13Q8NBP0 860 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 TMIEQ8NEW7 156 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 OR2AP1Q8NGE2 309 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 OR2A12Q8NGT7 310 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 GANCQ8TET4 914 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 NSMCE1Q8WV22 266 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 OR8D1Q8WZ84 308 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 MAML1Q92585 1016 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 P3H4Q92791 437 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 FAM131CQ96AQ9 280 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 PSKH2Q96QS6 385 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 FAM129BQ96TA1 746 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 TLR10Q9BXR5 811 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 PABPC3Q9H361 631 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 C6orf106Q9H6K1 298 aaPredicted RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 SGK2Q9HBY8 427 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 HAUS2Q9NVX0 235 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 FBXL12Q9NXK8 326 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 SEPT3Q9UH03 358 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 EIF2B4Q9UI10 523 aaKnown RBP10.03□□□□□ -0.8
GGA3-209ENST00000580646 NCKAP1Q9Y2A7 1128 aa10.03□□□□□ -0.8
GGA3-209ENST00000580646 USP27XA6NNY8 438 aa10.02□□□□□ -0.81
GGA3-209ENST00000580646 HACD1B0YJ81 288 aa10.02□□□□□ -0.81
GGA3-209ENST00000580646 C1QTNF3-AMACRE9PGA6 284 aa10.02□□□□□ -0.81
GGA3-209ENST00000580646 K7ERQ8 282 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms