RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 HADHQ16836 314 aaKnown RBP24.23■■□□□ 1.47
SHMT1-206ENST00000579558 SEL1L3Q68CR1 1132 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 LZTR1Q8N653 840 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 RAB7BQ96AH8 199 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 VOPP1Q96AW1 172 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 CCDC42Q96M95 316 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 CSPG4P5Q96PW8 444 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 MYOCQ99972 504 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 NHEJ1Q9H9Q4 299 aaPredicted RBP24.23■■□□□ 1.47
SHMT1-206ENST00000579558 PCDH18Q9HCL0 1135 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 GDF3Q9NR23 364 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 MFHAS1Q9Y4C4 1052 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 AKR1B15C9JRZ8 316 aaPredicted RBP24.22■■□□□ 1.47
SHMT1-206ENST00000579558 ABL2P42684 1182 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 NXPH1P58417 271 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 FAM193AP78312 1265 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 IL9RQ01113 521 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 TBX2Q13207 712 aaPredicted RBP24.22■■□□□ 1.47
SHMT1-206ENST00000579558 KRT81Q14533 505 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 KIAA1161Q6NSJ0 714 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 TMCO3Q6UWJ1 677 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 IQCHQ86VS3 1027 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 FEM1CQ96JP0 617 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 ELF4Q99607 663 aaPredicted RBP24.22■■□□□ 1.47
SHMT1-206ENST00000579558 SPTLC3Q9NUV7 552 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 CA5BQ9Y2D0 317 aa24.22■■□□□ 1.47
SHMT1-206ENST00000579558 A0A1B0GTQ1 180 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 NEMP1O14524 444 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 INSIG1O15503 277 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 FLRT2O43155 660 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 MAGEC1O60732 1142 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 PALMO75781 387 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 PROSCO94903 275 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 TMEM253P0C7T8 217 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 HNRNPA2B1P22626 353 aaKnown RBP24.21■■□□□ 1.47
SHMT1-206ENST00000579558 AKT2P31751 481 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 GJC1P36383 396 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 CDH6P55285 790 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 RPS21P63220 83 aaKnown RBP24.21■■□□□ 1.47
SHMT1-206ENST00000579558 OVGP1Q12889 678 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 TMEM259Q4ZIN3 620 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 PRAMEF14Q5SWL7 426 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 ARHGAP36Q6ZRI8 547 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 FZD3Q9NPG1 666 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 ETNK2Q9NVF9 386 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 IPO11Q9UI26 975 aaKnown RBP24.21■■□□□ 1.47
SHMT1-206ENST00000579558 ANGPTL2Q9UKU9 493 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 PCOLCE2Q9UKZ9 415 aa24.21■■□□□ 1.47
SHMT1-206ENST00000579558 TPRP12270 2363 aaKnown RBP24.21■■□□□ 1.47
SHMT1-206ENST00000579558 TRPM6Q9BX84 2022 aa24.2■■□□□ 1.47
SHMT1-206ENST00000579558 PCDHGA12O60330 932 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 IL10RBQ08334 325 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 FOXC1Q12948 553 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 TRIP6Q15654 476 aaKnown RBP24.2■■□□□ 1.46
SHMT1-206ENST00000579558 DBX2Q6ZNG2 339 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 CPNE8Q86YQ8 564 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 TP53INP2Q8IXH6 220 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 TMEM145Q8NBT3 493 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 CINPQ9BW66 212 aaPredicted RBP24.2■■□□□ 1.46
SHMT1-206ENST00000579558 CPEB1Q9BZB8 566 aaKnown RBP24.2■■□□□ 1.46
SHMT1-206ENST00000579558 LCMT1Q9UIC8 334 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 ITM2BQ9Y287 266 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 CABIN1Q9Y6J0 2220 aa24.2■■□□□ 1.46
SHMT1-206ENST00000579558 TSPAN6O43657 245 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 CBFA2T3O75081 653 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 PIGNO95427 931 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 RFTN1Q14699 578 aaPredicted RBP24.19■■□□□ 1.46
SHMT1-206ENST00000579558 GRM3Q14832 879 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 TTC7BQ86TV6 843 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 ZSCAN30Q86W11 494 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 SPATS2Q86XZ4 545 aaKnown RBP24.19■■□□□ 1.46
SHMT1-206ENST00000579558 RHBDD1Q8TEB9 315 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 TSC1Q92574 1164 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 KLHDC7BQ96G42 594 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 SLC17A9Q9BYT1 436 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 RCOR3Q9P2K3 495 aaPredicted RBP24.19■■□□□ 1.46
SHMT1-206ENST00000579558 DKK3Q9UBP4 350 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 GGT7Q9UJ14 662 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 BTBD3Q9Y2F9 522 aa24.19■■□□□ 1.46
SHMT1-206ENST00000579558 TMEM110-MUSTN1A8MSY1 372 aa24.18■■□□□ 1.46
SHMT1-206ENST00000579558 SERPINB6P35237 376 aa24.18■■□□□ 1.46
SHMT1-206ENST00000579558 FGL2Q14314 439 aa24.18■■□□□ 1.46
SHMT1-206ENST00000579558 LRRC73Q5JTD7 316 aa24.18■■□□□ 1.46
SHMT1-206ENST00000579558 OXR1Q8N573 874 aa24.18■■□□□ 1.46
SHMT1-206ENST00000579558 TSEN2Q8NCE0 465 aaKnown RBP24.18■■□□□ 1.46
SHMT1-206ENST00000579558 ERVMER34-1Q9H9K5 563 aa24.18■■□□□ 1.46
SHMT1-206ENST00000579558 YKT6O15498 198 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 SPINT1O43278 529 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 CD48P09326 243 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 THEGLP0DJG4 465 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 XPAP23025 273 aaPredicted RBP24.17■■□□□ 1.46
SHMT1-206ENST00000579558 GRK6P43250 576 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 RGRP47804 291 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 ARRB1P49407 418 aaPredicted RBP24.17■■□□□ 1.46
SHMT1-206ENST00000579558 CLDN2P57739 230 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 SHC2P98077 582 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 MMRN1Q13201 1228 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 SHBQ15464 509 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 INAVAQ3KP66 663 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 ATP13A4Q4VNC1 1196 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms