RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 NFIL3Q16649 462 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 GORABQ5T7V8 394 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 PLD5Q8N7P1 536 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 TBC1D22AQ8WUA7 517 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 ZBTB10Q96DT7 871 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 YME1L1Q96TA2 773 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 LBHD1Q9BQE6 289 aaPredicted RBP5.53□□□□□ -1.52
NUP88-213ENST00000576862 IFT80Q9P2H3 777 aaPredicted RBP5.53□□□□□ -1.52
NUP88-213ENST00000576862 SRPRBQ9Y5M8 271 aaKnown RBP5.53□□□□□ -1.52
NUP88-213ENST00000576862 PEG3Q9GZU2 1588 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 GOLGA6L10A0A0M3HER8 536 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 PLEKHD1A6NEE1 506 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 TEX22C9J3V5 150 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 PROB1E7EW31 1015 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 URODP06132 367 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 NGFRP08138 427 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 RYKP34925 604 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 GPD2P43304 727 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 PCYT1AP49585 367 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 VAMP2P63027 116 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 CRYZQ08257 329 aaKnown RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 TRPC3Q13507 836 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 ERV3-1Q14264 604 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 PLEKHO1Q53GL0 409 aaPredicted RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 ZNF766Q5HY98 468 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 MON1BQ7L1V2 547 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 TICAM2Q86XR7 235 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 TNIP2Q8NFZ5 429 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 HTRA1Q92743 480 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 RNF183Q96D59 192 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 ZPBPQ9BS86 351 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 NTPCRQ9BSD7 190 aaKnown RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 FUZQ9BT04 418 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 INTS2Q9H0H0 1204 aaKnown RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 HIPK2Q9H2X6 1198 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 MYH16Q9H6N6 1097 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 CLK4Q9HAZ1 481 aaKnown RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 SPATS2LQ9NUQ6 558 aaKnown RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 IL36RNQ9UBH0 155 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 PEMTQ9UBM1 199 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 SLC25A10Q9UBX3 287 aaPredicted RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 CNOT7Q9UIV1 285 aaKnown RBP5.52□□□□□ -1.53
NUP88-213ENST00000576862 PCDHGB5Q9Y5G0 923 aa5.52□□□□□ -1.53
NUP88-213ENST00000576862 CCDC88BA6NC98 1476 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 IGKV2D-30A0A075B6S6 120 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 ARHGAP10A1A4S6 786 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 CHL1O00533 1208 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 HNRNPA1P09651 372 aaKnown RBP eCLIP5.51□□□□□ -1.53
NUP88-213ENST00000576862 PLA2G2AP14555 144 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 NAGAP17050 411 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 ITGB6P18564 788 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 LIFRP42702 1097 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 ADORA2A-AS1P86434 159 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 SHBQ15464 509 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 EDRF1Q3B7T1 1238 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 MEPCEQ7L2J0 689 aaKnown RBP5.51□□□□□ -1.53
NUP88-213ENST00000576862 PATL1Q86TB9 770 aaKnown RBP5.51□□□□□ -1.53
NUP88-213ENST00000576862 PALB2Q86YC2 1186 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 DENND6AQ8IWF6 608 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 IQCF1Q8N6M8 205 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 MIGA1Q8NAN2 632 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 HVCN1Q96D96 273 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 TMEM204Q9BSN7 226 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 KRTAP9-8Q9BYQ0 159 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 BEX4Q9NWD9 120 aaPredicted RBP5.51□□□□□ -1.53
NUP88-213ENST00000576862 PDP2Q9P2J9 529 aa5.51□□□□□ -1.53
NUP88-213ENST00000576862 GUCY1B2O75343 617 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 IFIT1P09914 478 aaKnown RBP5.5□□□□□ -1.53
NUP88-213ENST00000576862 SRD5A1P18405 259 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 EDN2P20800 178 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 AMTP48728 403 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 TUBP50607 506 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 NUDT6P53370 316 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 CDH15P55291 814 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 EFNB1P98172 346 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 CYP4A11Q02928 519 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 CTTNQ14247 550 aaKnown RBP5.5□□□□□ -1.53
NUP88-213ENST00000576862 SLC22A25Q6T423 547 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 FAM160B2Q86V87 743 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 NEUROG1Q92886 237 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 PHF21BQ96EK2 531 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 NAF1Q96HR8 494 aaKnown RBP5.5□□□□□ -1.53
NUP88-213ENST00000576862 CDT1Q9H211 546 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 SNTG1Q9NSN8 517 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 ANKRD10Q9NXR5 420 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 NDRG3Q9UGV2 375 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 TBX20Q9UMR3 447 aa5.5□□□□□ -1.53
NUP88-213ENST00000576862 LOC102724159A0A0B4J2E5 919 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 IGHV4-28A0A0C4DH34 117 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 GAGE10A6NGK3 116 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 KDM4EB2RXH2 506 aaPredicted RBP5.49□□□□□ -1.53
NUP88-213ENST00000576862 GTPBP1O00178 669 aaKnown RBP5.49□□□□□ -1.53
NUP88-213ENST00000576862 ASAP2O43150 1006 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 ITM2AO43736 263 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 ACAA1P09110 424 aaPredicted RBP5.49□□□□□ -1.53
NUP88-213ENST00000576862 TNFRSF8P28908 595 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 TKTP29401 623 aaKnown RBP5.49□□□□□ -1.53
NUP88-213ENST00000576862 GGT5P36269 586 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 CLCN5P51795 746 aa5.49□□□□□ -1.53
NUP88-213ENST00000576862 EFNA5P52803 228 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms