RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SETMARQ53H47 684 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 BOLA3Q53S33 107 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 PPP6R3Q5H9R7 873 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 NAPEPLDQ6IQ20 393 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 NEK5Q6P3R8 708 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ALKBH5Q6P6C2 394 aaKnown RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 FBXL19Q6PCT2 694 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 LYPD8Q6UX82 237 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 RFX8Q6ZV50 586 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ERN2Q76MJ5 926 aaKnown RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 UMODL1-AS1Q8N2C9 162 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 CHST14Q8NCH0 376 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 DEFB124Q8NES8 71 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 OR2AP1Q8NGE2 309 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 OR8K1Q8NGG5 319 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 OR2I1PQ8NGU4 316 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 CTNNBL1Q8WYA6 563 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 GATA6Q92908 595 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ISG20Q96AZ6 181 aaKnown RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 SERAC1Q96JX3 654 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 GDAP1L1Q96MZ0 367 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 SLC6A18Q96N87 628 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 SNRNP25Q9BV90 132 aaKnown RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 NUP85Q9BW27 656 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 TM6SF2Q9BZW4 377 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 THAP2Q9H0W7 228 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ZDHHC6Q9H6R6 413 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 GAREM1Q9H706 876 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 SP110Q9HB58 689 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 GPATCH2LQ9NWQ4 482 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 HECAQ9UBI9 543 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 UBA2Q9UBT2 640 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 LCMT1Q9UIC8 334 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ANAPC7Q9UJX3 599 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 SARDHQ9UL12 918 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 NEU3Q9UQ49 428 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 DMTF1Q9Y222 760 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ANKRD6Q9Y2G4 727 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 PI4KAP42356 2102 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ADAMTS20P59510 1910 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 CELSR3Q9NYQ7 3312 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 CACNA1EQ15878 2313 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 A0A087X0T9 212 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 MYO1FO00160 1098 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 PLK4O00444 970 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 KRIT1O00522 736 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 NEMP1O14524 444 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 VILLO15195 856 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 RNGTTO60942 597 aaKnown RBP8.23□□□□□ -1.09
VPS53-214ENST00000572607 LRCH4O75427 683 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 PCDH8O95206 1070 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 CTSLP07711 333 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 H2AFZP0C0S5 128 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 FAM228BP0C875 321 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 ZNF883P0CG24 379 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 SPINK2P20155 84 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 ITGB7P26010 798 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 CD38P28907 300 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 MAT2AP31153 395 aaKnown RBP8.23□□□□□ -1.09
VPS53-214ENST00000572607 HNRNPH3P31942 346 aaKnown RBP8.23□□□□□ -1.09
VPS53-214ENST00000572607 CCT8P50990 548 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 NDST2P52849 883 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 PPP2CBP62714 309 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 PPP2CAP67775 309 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 SEMA3BQ13214 749 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 KRT81Q14533 505 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 STAT4Q14765 748 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 HADHQ16836 314 aaKnown RBP8.23□□□□□ -1.09
VPS53-214ENST00000572607 HLA-BQ31612 363 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 INO80DQ53TQ3 878 aaPredicted RBP8.23□□□□□ -1.09
VPS53-214ENST00000572607 CFAP58Q5T655 872 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 PIP5KL1Q5T9C9 394 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 AGBL4Q5VU57 503 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 UNQ6494/PRO21346Q6UXR6 183 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 LEKR1Q6ZMV7 388 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 H2AFVQ71UI9 128 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 ZSCAN30Q86W11 494 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 TRIM69Q86WT6 500 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 CNGA4Q8IV77 575 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 VSTM4Q8IW00 320 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 NAXDQ8IW45 347 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 OXR1Q8N573 874 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 PAF1Q8N7H5 531 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 C1orf216Q8TAB5 229 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 SETD7Q8WTS6 366 aaKnown RBP8.23□□□□□ -1.09
VPS53-214ENST00000572607 HSPH1Q92598 858 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 FAM131CQ96AQ9 280 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 ARRDC3Q96B67 414 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 ARHGEF26Q96DR7 871 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 HMCESQ96FZ2 354 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 CCDC42Q96M95 316 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 PEBP4Q96S96 227 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 KCTD15Q96SI1 283 aaPredicted RBP8.23□□□□□ -1.09
VPS53-214ENST00000572607 OSBPL1AQ9BXW6 950 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 HDAC8Q9BY41 377 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 MAGEB5Q9BZ81 275 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 GDF3Q9NR23 364 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 TM7SF3Q9NS93 570 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 CTTNBP2NLQ9P2B4 639 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 ARHGAP20Q9P2F6 1191 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms