RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 DPYDQ12882 1025 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 TPRG1LQ5T0D9 272 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 SYPL2Q5VXT5 272 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 FBXL22Q6P050 247 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 TMEM270Q6UE05 265 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 DPY19L3Q6ZPD9 716 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 PIM3Q86V86 326 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 HEATR4Q86WZ0 1026 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 FMR1NBQ8N0W7 255 aaPredicted RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 GUF1Q8N442 669 aaKnown RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 RYBPQ8N488 228 aaPredicted RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 APOBEC4Q8WW27 367 aaKnown RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 NKD1Q969G9 470 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 KIAA1143Q96AT1 154 aaPredicted RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 ARHGEF26Q96DR7 871 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 ABHD17AQ96GS6 310 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 C1QTNF2Q9BXJ5 285 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 B3GNT4Q9C0J1 378 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 VANGL2Q9ULK5 521 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 PCDHB4Q9Y5E5 795 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 NYNRINQ9P2P1 1898 aaKnown RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 PRR19A6NJB7 356 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 EFCAB7A8K855 629 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 AP1G1O43747 822 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 SNAP91O60641 907 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 ADCY5O95622 1261 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 FYNP06241 537 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 RHOCP08134 193 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 PAEPP09466 180 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 EPB41P11171 864 aaKnown RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 PRKCSHP14314 528 aaPredicted RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 LIFP15018 202 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 ACADSBP45954 432 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 HK3P52790 923 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 COPB1P53618 953 aaKnown RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 CDK17Q00537 523 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 ZFP36L1Q07352 338 aaKnown RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 LRMPQ12912 555 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 MTA1Q13330 715 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 BIRC2Q13490 618 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 AUHQ13825 339 aaKnown RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 CNGA2Q16280 664 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 DCAF17Q5H9S7 520 aaPredicted RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 C22orf39Q6P5X5 142 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 LINGO4Q6UY18 593 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 MACC1Q6ZN28 852 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 CACNA2D3Q8IZS8 1091 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 RAB7BQ96AH8 199 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 ALG14Q96F25 216 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 TAAR9Q96RI9 348 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 MED15Q96RN5 788 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 KLF6Q99612 283 aaPredicted RBP11.26□□□□□ -0.61
VPS53-207ENST00000570510 HEPHQ9BQS7 1158 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 EDEM3Q9BZQ6 932 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 POPDC2Q9HBU9 364 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 DDIT4Q9NX09 232 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 VPS51Q9UID3 782 aa11.26□□□□□ -0.61
VPS53-207ENST00000570510 TRPM6Q9BX84 2022 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 TOR1BO14657 336 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 SMAD6O43541 496 aaKnown RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 GABBR2O75899 941 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 RASGRP1O95267 797 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 CELA2BP08218 269 aaPredicted RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 GLB1P16278 677 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 CD97P48960 835 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 CDH4P55283 916 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 YWHAZP63104 245 aaKnown RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 DEFB109BQ30KR1 87 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 EDRF1Q3B7T1 1238 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 AMZ1Q400G9 498 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 RETSATQ6NUM9 610 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 OR52K2Q8NGK3 314 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 ATL2Q8NHH9 583 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 ASB12Q8WXK4 309 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 TFAP2BQ92481 460 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 TSACCQ96A04 125 aaPredicted RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 PRMT1Q99873 361 aaKnown RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 SPON2Q9BUD6 331 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 EFHD1Q9BUP0 239 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 INTS2Q9H0H0 1204 aaKnown RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 SIK2Q9H0K1 926 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 CDH19Q9H159 772 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 ZDHHC6Q9H6R6 413 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 GPN2Q9H9Y4 310 aaPredicted RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 LRIT1Q9P2V4 623 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 APPL1Q9UKG1 709 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 MAPK8IP1Q9UQF2 711 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 ICE1Q9Y2F5 2266 aa11.25□□□□□ -0.61
VPS53-207ENST00000570510 COL27A1Q8IZC6 1860 aaPredicted RBP11.25□□□□□ -0.61
VPS53-207ENST00000570510 TTLL8A6PVC2 850 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 TMEM110-MUSTN1A8MSY1 372 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 KRT38O76015 456 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 TM7SF2O76062 418 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 BRD2P25440 801 aaKnown RBP11.24□□□□□ -0.61
VPS53-207ENST00000570510 ELAVL4P26378 380 aaKnown RBP11.24□□□□□ -0.61
VPS53-207ENST00000570510 UGT1A3P35503 534 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 PPM1FP49593 454 aaPredicted RBP11.24□□□□□ -0.61
VPS53-207ENST00000570510 UBE2HP62256 183 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 MC1RQ01726 317 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms