RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 C22orf39Q6P5X5 142 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 DPY19L3Q6ZPD9 716 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 PARS2Q7L3T8 475 aaKnown RBP18.36■□□□□ 0.53
CLK3-227ENST00000570296 KIAA0895Q8NCT3 520 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 FBXL13Q8NEE6 735 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 CCDC112Q8NEF3 446 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 PMEPA1Q969W9 287 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 MOCOSQ96EN8 888 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 MUC3BQ9H195 1237 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 GPN2Q9H9Y4 310 aaPredicted RBP18.36■□□□□ 0.53
CLK3-227ENST00000570296 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.36■□□□□ 0.53
CLK3-227ENST00000570296 RAB20Q9NX57 234 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 VPS51Q9UID3 782 aa18.36■□□□□ 0.53
CLK3-227ENST00000570296 NEMP1O14524 444 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 CLDN11O75508 207 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 RASGRP1O95267 797 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 CPNE6O95741 557 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 IGLV3-25P01717 112 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 SLC2A3P11169 496 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 PDIA4P13667 645 aaKnown RBP18.35■□□□□ 0.53
CLK3-227ENST00000570296 NR1D1P20393 614 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 YWHAEP62258 255 aaKnown RBP18.35■□□□□ 0.53
CLK3-227ENST00000570296 STK4Q13043 487 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 CLPPQ16740 277 aaPredicted RBP18.35■□□□□ 0.53
CLK3-227ENST00000570296 SYPL2Q5VXT5 272 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 PIM3Q86V86 326 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 HID1Q8IV36 788 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 CPT1CQ8TCG5 803 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 FAM149B1Q96BN6 582 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 PSMB7Q99436 277 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 C1QTNF7Q9BXJ2 289 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 ASPSCR1Q9BZE9 553 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 MIS12Q9H081 205 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 TNKS2Q9H2K2 1166 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.35■□□□□ 0.53
CLK3-227ENST00000570296 B3GALT1Q9Y5Z6 326 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 ARHGEF17Q96PE2 2063 aaPredicted RBP18.35■□□□□ 0.53
CLK3-227ENST00000570296 CHD5Q8TDI0 1954 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 HIVEP1P15822 2718 aa18.35■□□□□ 0.53
CLK3-227ENST00000570296 WIPF3A6NGB9 483 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 TTLL8A6PVC2 850 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 MKRN2OSH3BPM6 223 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 NUDT21O43809 227 aaKnown RBP18.34■□□□□ 0.53
CLK3-227ENST00000570296 CALUO43852 315 aaPredicted RBP18.34■□□□□ 0.53
CLK3-227ENST00000570296 SNAP91O60641 907 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 TRUB2O95900 331 aaKnown RBP18.34■□□□□ 0.53
CLK3-227ENST00000570296 PEX5P50542 639 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 ARHGEF7Q14155 803 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 ARHGAP44Q17R89 818 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 FAM173BQ6P4H8 233 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 OGFOD3Q6PK18 319 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 ASB18Q6ZVZ8 466 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 VPS36Q86VN1 386 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 CCDC13Q8IYE1 715 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 USP28Q96RU2 1077 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 LRIT1Q9P2V4 623 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 TRAF3IP3Q9Y228 551 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 KCTD3Q9Y597 815 aa18.34■□□□□ 0.53
CLK3-227ENST00000570296 ZNF106Q9H2Y7 1883 aaKnown RBP18.34■□□□□ 0.53
CLK3-227ENST00000570296 TMEM110-MUSTN1A8MSY1 372 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 MXI1P50539 228 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 COPB1P53618 953 aaKnown RBP18.33■□□□□ 0.52
CLK3-227ENST00000570296 MCCD1P59942 119 aaPredicted RBP18.33■□□□□ 0.52
CLK3-227ENST00000570296 EIF4EBP2Q13542 120 aaPredicted RBP18.33■□□□□ 0.52
CLK3-227ENST00000570296 CUL2Q13617 745 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 CUL4BQ13620 913 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 TCEA2Q15560 299 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 ALG11Q2TAA5 492 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 FAM186BQ8IYM0 893 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 DCAF4L2Q8NA75 395 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 ARHGEF26Q96DR7 871 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 HEPHQ9BQS7 1158 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 DONSONQ9NYP3 566 aa18.33■□□□□ 0.52
CLK3-227ENST00000570296 K7EM74 188 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 M0QYV0 167 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 NR2F2P24468 414 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 MAP4P27816 1152 aaKnown RBP18.32■□□□□ 0.52
CLK3-227ENST00000570296 ABL2P42684 1182 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 IRAK1P51617 712 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 CDH4P55283 916 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 B4GALNT1Q00973 533 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 MTA1Q13330 715 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 TRA2AQ13595 282 aaKnown RBP eCLIP18.32■□□□□ 0.52
CLK3-227ENST00000570296 AUHQ13825 339 aaKnown RBP18.32■□□□□ 0.52
CLK3-227ENST00000570296 HLTFQ14527 1009 aaKnown RBP eCLIP18.32■□□□□ 0.52
CLK3-227ENST00000570296 CNGA2Q16280 664 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 NFIL3Q16649 462 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 C14orf28Q4W4Y0 310 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 RCBTB1Q8NDN9 531 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 TFAP2BQ92481 460 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 ART4Q93070 314 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 TSACCQ96A04 125 aaPredicted RBP18.32■□□□□ 0.52
CLK3-227ENST00000570296 RBM15Q96T37 977 aaKnown RBP eCLIP18.32■□□□□ 0.528e-7■■■□□ 18.1
CLK3-227ENST00000570296 CEP44Q9C0F1 390 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 INTS2Q9H0H0 1204 aaKnown RBP18.32■□□□□ 0.52
CLK3-227ENST00000570296 RDH14Q9HBH5 336 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 CASS4Q9NQ75 786 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 DKK3Q9UBP4 350 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 PILRAQ9UKJ1 303 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 DAAM1Q9Y4D1 1078 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms